- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.42 Å
- Oligo State
- monomer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x CA: CALCIUM ION(Non-covalent)
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.4: 5 residues within 4Å:- Chain A: N.95, R.96, I.315
- Ligands: SCN.18, SCN.19
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.96
NAG.5: 7 residues within 4Å:- Chain A: N.205, S.208, L.210, L.212, A.214, V.215, Q.217
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.205, A:S.208, A:V.215, A:Q.217, A:Q.217
NAG.6: 3 residues within 4Å:- Chain A: N.332, S.334, V.335
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.332
- 16 x IOD: IODIDE ION(Non-functional Binders)
IOD.7: 6 residues within 4Å:- Chain A: A.44, R.45, W.46, N.341, V.342, W.452
Ligand excluded by PLIPIOD.8: 3 residues within 4Å:- Chain A: E.77, N.80, P.145
Ligand excluded by PLIPIOD.9: 3 residues within 4Å:- Chain A: N.216, Q.217, F.229
Ligand excluded by PLIPIOD.10: 2 residues within 4Å:- Chain A: F.309, W.530
Ligand excluded by PLIPIOD.11: 1 residues within 4Å:- Chain A: I.387
Ligand excluded by PLIPIOD.12: 2 residues within 4Å:- Chain A: P.236, T.425
Ligand excluded by PLIPIOD.13: 2 residues within 4Å:- Chain A: H.377, H.429
Ligand excluded by PLIPIOD.14: 2 residues within 4Å:- Chain A: A.225, R.271
Ligand excluded by PLIPIOD.15: 3 residues within 4Å:- Chain A: R.76, P.149, N.419
Ligand excluded by PLIPIOD.23: 4 residues within 4Å:- Chain A: E.258
- Ligands: HEM.3, IOD.24, IOD.25
Ligand excluded by PLIPIOD.24: 4 residues within 4Å:- Chain A: R.255, E.258
- Ligands: HEM.3, IOD.23
Ligand excluded by PLIPIOD.25: 3 residues within 4Å:- Chain A: F.254, F.381
- Ligands: IOD.23
Ligand excluded by PLIPIOD.26: 5 residues within 4Å:- Chain A: E.363, R.397, I.559, T.560, K.561
Ligand excluded by PLIPIOD.27: 2 residues within 4Å:- Chain A: S.359, P.367
Ligand excluded by PLIPIOD.28: 2 residues within 4Å:- Chain A: E.196, S.198
Ligand excluded by PLIPIOD.29: 3 residues within 4Å:- Chain A: S.198, L.199, R.202
Ligand excluded by PLIP- 4 x SCN: THIOCYANATE ION(Non-functional Binders)
SCN.16: 4 residues within 4Å:- Chain A: N.230, K.232, P.236, C.248
No protein-ligand interaction detected (PLIP)SCN.18: 4 residues within 4Å:- Chain A: N.95, R.96, R.506
- Ligands: NAG.4
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.506, A:R.506
SCN.19: 5 residues within 4Å:- Chain A: H.565, A.566, F.567, Q.568
- Ligands: NAG.4
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.568
SCN.21: 3 residues within 4Å:- Chain A: P.197, A.200, S.201
No protein-ligand interaction detected (PLIP)- 1 x GOL: GLYCEROL(Non-functional Binders)
- 1 x OSM: 1-(OXIDOSULFANYL)METHANAMINE(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Maurya, A. et al., Structure of bovine lactoperoxidase with multiple iodide ions in the distaline heme cavity. To Be Published
- Release Date
- 2020-04-15
- Peptides
- Lactoperoxidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.42 Å
- Oligo State
- monomer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x CA: CALCIUM ION(Non-covalent)
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 16 x IOD: IODIDE ION(Non-functional Binders)
- 4 x SCN: THIOCYANATE ION(Non-functional Binders)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 1 x OSM: 1-(OXIDOSULFANYL)METHANAMINE(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Maurya, A. et al., Structure of bovine lactoperoxidase with multiple iodide ions in the distaline heme cavity. To Be Published
- Release Date
- 2020-04-15
- Peptides
- Lactoperoxidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A