SMTL ID : 6moh.1

Dimeric DARPin C_R3 complex with EpoR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-2-2-mer

Ligands

7 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: D.90, H.122, K.123, R.124, I.125 Ligands: NA.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.122, A:K.123, A:R.124, A:R.124, A:I.125 Salt bridges: A:H.122 PO4.2: 5 residues within 4Å: Chain A: G.88, H.89, D.90, E.91 Chain B: R.124 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.90, A:E.91 Salt bridges: B:R.124 PO4.3: 3 residues within 4Å: Chain A: D.41, I.42, D.44 No protein-ligand interaction detected (PLIP) PO4.5: 5 residues within 4Å: Chain B: D.90, H.122, K.123, R.124, I.125 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:D.90, B:K.123, B:R.124, B:I.125 Water bridges: B:G.121, B:R.124 Salt bridges: B:H.122, B:R.124 PO4.6: 4 residues within 4Å: Chain B: R.119, K.144, D.152 Chain C: E.22 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.152, B:D.152, B:N.153 Salt bridges: B:R.119, B:K.144 PO4.7: 6 residues within 4Å: Chain A: R.124 Chain B: G.88, H.89, D.90, E.91, I.92 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.90, B:E.91 Salt bridges: A:R.124 PO4.8: 5 residues within 4Å: Chain C: E.10, A.14, T.72, A.73, R.78 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.10, C:A.73 Salt bridges: C:R.78

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 3 residues within 4Å: Chain A: G.121, H.122 Ligands: PO4.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mohan, K. et al., Topological control of cytokine receptor signaling induces differential effects in hematopoiesis. Science (2019)

Release Date

2019-06-05

Peptides

Dimeric DARPin E2C (C_R3): AB
Erythropoietin receptor: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Dimeric DARPin E2C (C_R3)

Erythropoietin receptor

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