SMTL ID : 6njz.1 (1 other biounit)

EphA2 LBD in complex with YSA-GSGSK-bio peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: R.73, F.75, E.147, R.148, S.149 Ligands: GOL.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.149, A:S.149, A:S.149, A:S.149 GOL.2: 6 residues within 4Å: Chain A: E.8, F.75, E.147, Y.177, K.179 Ligands: GOL.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.8, A:Y.177, A:K.179 GOL.3: 6 residues within 4Å: Chain A: W.60, Y.102, K.116, R.117, F.119, Q.163 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.116 Water bridges: A:Q.163

1 x BTN: BIOTIN(Non-covalent)

BTN.4: 2 residues within 4Å: Chain A: Y.28, T.112 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gomez-Soler, M. et al., Engineering nanomolar peptide ligands that differentially modulate EphA2 receptor signaling. J.Biol.Chem. (2019)

Release Date

2019-05-01

Peptides

Ephrin type-A receptor 2: A
YSA-GSGSK-bio peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Ephrin type-A receptor 2

YSA-GSGSK-bio peptide

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