SMTL ID : 6nk0.1 (1 other biounit)

EphA2 LBD in complex with bA-WLA-Yam peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

hetero-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: G.22, W.23, L.24, R.62, N.64, G.111, T.112 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.22, A:R.62, A:N.64, A:N.64 Water bridges: A:L.24, A:G.111 GOL.4: 3 residues within 4Å: Chain A: E.146, E.147, R.148 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.146, A:E.147, A:R.148

1 x ACA: 6-AMINOHEXANOIC ACID(Non-covalent)

ACA.2: 8 residues within 4Å: Chain A: D.58, W.60, Y.102, K.116, R.117, F.119, Q.163 Ligands: EDO.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.60, A:Y.102 Hydrogen bonds: A:D.58, A:W.60, A:K.116, A:Q.163 Water bridges: A:K.121

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: R.117, L.118, F.119, T.120 Ligands: ACA.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gomez-Soler, M. et al., Engineering nanomolar peptide ligands that differentially modulate EphA2 receptor signaling. J.Biol.Chem. (2019)

Release Date

2019-05-01

Peptides

Ephrin type-A receptor 2: A
bA-WLA-Yam: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Ephrin type-A receptor 2

bA-WLA-Yam

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