SMTL ID : 6nk1.2 (1 other biounit)

EphA2 LBD in complex with bA-WLA-YRPKbio peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

hetero-1-1-mer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: H.26, W.60, F.114, Q.115, K.116 Ligands: GOL.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.60, A:F.114, A:K.116 Hydrogen bonds: A:K.116 Water bridges: A:H.26, A:R.117 Salt bridges: A:H.26 ACT.2: 10 residues within 4Å: Chain A: R.62, A.104, S.106, Y.110, N.113, F.114, Q.115, L.118, F.119, Y.159 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.118, A:F.119, A:Y.159 Salt bridges: A:R.62

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: H.26, P.27, D.58, N.59, W.60, K.116 Ligands: ACT.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.26, A:D.58, A:D.58, A:K.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gomez-Soler, M. et al., Engineering nanomolar peptide ligands that differentially modulate EphA2 receptor signaling. J.Biol.Chem. (2019)

Release Date

2019-05-01

Peptides

Ephrin type-A receptor 2: A
bA-WLA-YRPKbio: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Ephrin type-A receptor 2

bA-WLA-YRPKbio

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