SMTL ID : 6nk0.2 (1 other biounit)

EphA2 LBD in complex with bA-WLA-Yam peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 6 residues within 4Å: Chain A: E.105, S.106, Y.110, T.154, R.155 Ligands: EDO.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.155, A:R.155 Water bridges: A:E.105, A:E.105, A:E.105

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: R.155 Ligands: PEG.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.155, A:R.155

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: R.73, F.75, E.147, R.148, S.149 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.149, A:S.149, A:S.149, A:S.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gomez-Soler, M. et al., Engineering nanomolar peptide ligands that differentially modulate EphA2 receptor signaling. J.Biol.Chem. (2019)

Release Date

2019-05-01

Peptides

Ephrin type-A receptor 2: A
bA-WLA-Yam: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Ephrin type-A receptor 2

bA-WLA-Yam

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