- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.48 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x OCA: OCTANOIC ACID (CAPRYLIC ACID)(Covalent)(Non-covalent)
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.2: 5 residues within 4Å:- Chain A: R.197, R.227, P.230, R.231, E.232
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:R.227, A:R.231, A:E.232
- Water bridges: A:R.227, A:E.232, A:E.232
- Salt bridges: A:R.197
PO4.7: 3 residues within 4Å:- Chain A: K.120, E.121, R.130
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.121
- Salt bridges: A:R.130
PO4.17: 4 residues within 4Å:- Chain C: L.119, K.120, E.121, R.130
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:L.119, C:E.121
- Salt bridges: C:R.130
- 5 x CA: CALCIUM ION(Non-covalent)
CA.3: 5 residues within 4Å:- Chain A: N.55, E.67, A.69, D.70, A.71
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:E.67, A:A.69, H2O.1, H2O.2, H2O.2
CA.4: 4 residues within 4Å:- Chain A: D.79, D.84, R.103, S.107
No protein-ligand interaction detected (PLIP)CA.9: 5 residues within 4Å:- Chain B: N.55, E.67, A.69, D.70, A.71
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:E.67, B:A.69, H2O.5, H2O.5, H2O.6
CA.10: 2 residues within 4Å:- Chain B: R.103, S.107
No protein-ligand interaction detected (PLIP)CA.14: 5 residues within 4Å:- Chain C: N.55, E.67, A.69, A.71
- Ligands: NAG.15
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:E.67, C:A.69
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
NAG.5: 2 residues within 4Å:- Chain A: N.55, D.70
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.55
NAG.11: 2 residues within 4Å:- Chain B: N.55, D.70
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.70
- Water bridges: B:N.55
NAG.15: 3 residues within 4Å:- Chain C: N.55, D.70
- Ligands: CA.14
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.55
- 3 x LTV: 2-hydroxy-3-(octadecanoyloxy)propyl pentacosanoate(Non-covalent)
LTV.6: 27 residues within 4Å:- Chain A: S.105, R.106, W.111, N.114, L.115, F.117, H.132, F.135, L.169, P.196, I.224, V.225, L.228, P.229, P.230, F.233, I.274, P.275, I.277, L.281
- Chain B: I.277, P.278
- Chain C: I.108, I.112
- Ligands: OCA.1, LTV.12, LTV.16
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:W.111, A:W.111, A:W.111, A:L.115, A:V.225, B:I.277
LTV.12: 27 residues within 4Å:- Chain A: I.108, I.112, L.115
- Chain B: S.105, R.106, W.111, N.114, L.115, F.135, S.168, L.169, P.196, I.224, V.225, L.228, P.229, P.230, F.233, I.274, P.275, I.277, H.280
- Chain C: I.277, P.278
- Ligands: LTV.6, OCA.8, LTV.16
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:W.111, B:W.111, B:I.224, B:V.225, B:V.225, B:I.274, B:I.277
LTV.16: 29 residues within 4Å:- Chain A: I.108, W.111, I.277, P.278
- Chain B: I.108, I.112, L.115
- Chain C: S.105, R.106, I.108, W.111, N.114, L.115, F.117, F.135, S.168, P.196, I.224, V.225, L.228, P.229, P.230, F.233, P.275, I.277, H.280
- Ligands: LTV.6, LTV.12, OCA.13
7 PLIP interactions:5 interactions with chain C, 1 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: C:W.111, C:W.111, C:L.115, C:I.277, C:I.277, B:L.115, A:P.278
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McPherson , A. et al., The Crystal Structures of Thermomyces (Humicola) Lanuginosa Lipase in Complex with Enzymatic Reactants. Curr Enzym Inhib (2020)
- Release Date
- 2024-05-01
- Peptides
- Lipase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
CC
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.48 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x OCA: OCTANOIC ACID (CAPRYLIC ACID)(Covalent)(Non-covalent)
- 3 x PO4: PHOSPHATE ION(Non-functional Binders)
- 5 x CA: CALCIUM ION(Non-covalent)
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
- 3 x LTV: 2-hydroxy-3-(octadecanoyloxy)propyl pentacosanoate(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McPherson , A. et al., The Crystal Structures of Thermomyces (Humicola) Lanuginosa Lipase in Complex with Enzymatic Reactants. Curr Enzym Inhib (2020)
- Release Date
- 2024-05-01
- Peptides
- Lipase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
CC
E