SMTL ID : 6or3.1 (1 other biounit)

Structure of an Acyl Intermediate of Thermomyces Lanuginosa Lipase With Palmitic Acid in an Orthorhombic Crystal

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 1 residues within 4Å: Chain A: D.49 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.49, H2O.1, H2O.1, H2O.6, H2O.6

1 x PLM: PALMITIC ACID(Covalent)

PLM.2: 16 residues within 4Å: Chain A: G.104, S.105, W.111, N.114, L.115, F.117, H.132, F.135, S.168, L.169, P.196, V.225, L.228, P.229, P.230, F.233 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.111, A:N.114, A:F.117, A:F.117, A:F.135, A:P.229, A:F.233 Hydrogen bonds: A:S.105, A:S.105, A:L.169

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 5 residues within 4Å: Chain A: N.55, E.67, K.68, A.69, D.70 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.55, A:K.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McPherson, A. et al., The crystal Structures of Thermomyces (Humicola) lanuginosa lipase in complex with enzymatic reactants. Current Enzyme Inhibition (2020)

Release Date

2020-05-20

Peptides

Lipase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lipase

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