- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.43 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x OCA: OCTANOIC ACID (CAPRYLIC ACID)(Covalent)
- 5 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.2: 6 residues within 4Å:- Chain A: R.197, R.227, P.230, R.231, E.232, N.270
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:R.227, A:R.231, A:N.270
- Water bridges: A:E.232, A:E.232, A:N.270
- Salt bridges: A:R.197
PO4.7: 3 residues within 4Å:- Chain A: K.120, E.121, R.130
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.121
- Water bridges: A:R.130, A:R.130
- Salt bridges: A:R.130
PO4.12: 6 residues within 4Å:- Chain B: R.197, R.227, P.230, R.231, E.232, N.270
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.231, B:E.232, B:N.270
- Salt bridges: B:R.197
PO4.17: 3 residues within 4Å:- Chain C: K.120, E.121, R.130
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:E.121
- Salt bridges: C:K.120, C:R.130
PO4.18: 7 residues within 4Å:- Chain C: R.197, R.227, P.230, R.231, E.232, N.270
- Ligands: LTV.16
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:R.231, C:N.270
- Salt bridges: C:R.197
- 4 x CA: CALCIUM ION(Non-covalent)
CA.3: 4 residues within 4Å:- Chain A: E.67, A.69, D.70, A.71
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:E.67, A:A.69, H2O.4, H2O.8, H2O.9
CA.4: 3 residues within 4Å:- Chain A: D.84, R.103, S.107
No protein-ligand interaction detected (PLIP)CA.9: 4 residues within 4Å:- Chain B: E.67, A.69, D.70, A.71
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:E.67, B:A.69, H2O.15, H2O.19, H2O.20
CA.14: 5 residues within 4Å:- Chain C: E.67, A.69, D.70, A.71
- Ligands: NAG.15
5 PLIP interactions:2 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:E.67, C:A.69, H2O.24, H2O.26, H2O.27
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)
NAG.5: 2 residues within 4Å:- Chain A: N.55, D.70
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.55, A:D.70
- Water bridges: A:N.55, A:N.55
NAG.10: 2 residues within 4Å:- Chain B: N.55, D.70
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:N.55, B:N.55, B:D.70
- Water bridges: B:N.55, B:N.55, B:D.70
NAG.15: 3 residues within 4Å:- Chain C: N.55, D.70
- Ligands: CA.14
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:N.55, C:D.70
- Water bridges: C:N.55, C:N.55, C:N.55, C:A.71
- 3 x LTV: 2-hydroxy-3-(octadecanoyloxy)propyl pentacosanoate(Non-covalent)
LTV.6: 32 residues within 4Å:- Chain A: S.105, R.106, S.107, W.111, N.114, L.115, F.117, H.132, F.135, S.168, L.169, P.196, I.224, V.225, L.228, P.229, P.230, F.233, I.274, P.275, I.277, H.280, L.281
- Chain B: I.277, P.278
- Chain C: I.108, W.111, I.112, L.115
- Ligands: OCA.1, LTV.11, LTV.16
12 PLIP interactions:3 interactions with chain C, 9 interactions with chain A- Hydrophobic interactions: C:I.108, C:I.112, C:L.115, A:W.111, A:W.111, A:W.111, A:L.115, A:I.224, A:L.228, A:P.275, A:I.277
- Hydrogen bonds: A:L.169
LTV.11: 32 residues within 4Å:- Chain A: I.108, W.111, I.112, L.115
- Chain B: S.105, R.106, W.111, N.114, L.115, F.117, H.132, F.135, S.168, L.169, P.196, I.224, V.225, L.228, P.229, P.230, F.233, I.274, P.275, D.276, I.277, H.280, L.281
- Chain C: I.277, P.278
- Ligands: LTV.6, OCA.8, LTV.16
10 PLIP interactions:2 interactions with chain C, 2 interactions with chain A, 6 interactions with chain B- Hydrophobic interactions: C:I.277, C:P.278, A:I.108, A:I.112, B:W.111, B:W.111, B:I.224, B:V.225, B:I.277
- Hydrogen bonds: B:H.132
LTV.16: 41 residues within 4Å:- Chain A: I.108, W.111, D.276, I.277, P.278, L.281
- Chain B: I.108, W.111, I.112, L.115
- Chain C: S.105, R.106, S.107, I.108, W.111, N.114, L.115, F.117, H.132, F.135, P.196, R.197, I.224, V.225, R.227, L.228, P.229, P.230, F.233, Q.271, P.272, N.273, I.274, P.275, I.277, H.280, L.281
- Ligands: LTV.6, LTV.11, OCA.13, PO4.18
18 PLIP interactions:5 interactions with chain B, 11 interactions with chain C, 2 interactions with chain A- Hydrophobic interactions: B:I.108, B:I.108, B:W.111, B:I.112, B:L.115, C:I.108, C:W.111, C:W.111, C:W.111, C:V.225, C:R.227, C:P.230, C:P.275, C:I.277, A:I.277, A:P.278
- Hydrogen bonds: C:N.114, C:H.132
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McPherson , A. et al., The Crystal Structures of Thermomyces (Humicola) Lanuginosa Lipase in Complex with Enzymatic Reactants. Curr Enzym Inhib (2020)
- Release Date
- 2024-05-01
- Peptides
- Lipase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
CC
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.43 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x OCA: OCTANOIC ACID (CAPRYLIC ACID)(Covalent)
- 5 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x CA: CALCIUM ION(Non-covalent)
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)
- 3 x LTV: 2-hydroxy-3-(octadecanoyloxy)propyl pentacosanoate(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McPherson , A. et al., The Crystal Structures of Thermomyces (Humicola) Lanuginosa Lipase in Complex with Enzymatic Reactants. Curr Enzym Inhib (2020)
- Release Date
- 2024-05-01
- Peptides
- Lipase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
CC
E