- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.43 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x OCA: OCTANOIC ACID (CAPRYLIC ACID)(Covalent)
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
NAG.2: 3 residues within 4Å:- Chain A: N.55, A.69, D.70
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:N.55
- Water bridges: A:N.55, A:N.55, A:N.55, A:N.55, A:N.55, A:A.69, A:A.71
NAG.8: 2 residues within 4Å:- Chain B: N.55, D.70
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.55
- Water bridges: B:N.55, B:N.55, B:A.69
NAG.14: 3 residues within 4Å:- Chain C: N.55, D.70
- Ligands: CA.13
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:N.55
- Water bridges: C:N.55, C:N.55, C:D.70, C:A.71
- 3 x LTV: 2-hydroxy-3-(octadecanoyloxy)propyl pentacosanoate(Covalent)(Non-covalent)
LTV.3: 26 residues within 4Å:- Chain A: S.105, W.111, N.114, L.115, F.117, H.132, F.135, S.168, L.169, P.196, I.224, V.225, L.228, P.229, P.230, E.232, F.233, I.277, H.280, L.281
- Chain B: L.115
- Chain C: D.276, I.277, P.278
- Ligands: OCA.1, LTV.9
9 PLIP interactions:1 interactions with chain C, 8 interactions with chain A- Hydrophobic interactions: C:P.278, A:W.111, A:L.115, A:L.228, A:L.228, A:P.230, A:E.232, A:F.233
- Hydrogen bonds: A:H.132
LTV.9: 33 residues within 4Å:- Chain A: I.277, P.278
- Chain B: S.105, R.106, S.107, W.111, N.114, L.115, F.117, H.132, F.135, S.168, L.169, P.196, I.224, V.225, L.228, P.229, P.230, F.233, P.272, N.273, I.274, P.275, I.277, H.280, L.281
- Chain C: I.108, I.112, L.115
- Ligands: LTV.3, OCA.6, LTV.15
9 PLIP interactions:7 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: B:W.111, B:V.225, B:L.228, B:P.275, B:I.277, C:I.112, C:L.115
- Hydrogen bonds: B:N.114, B:H.132
LTV.15: 30 residues within 4Å:- Chain A: I.108, W.111, I.112, L.115
- Chain B: I.224, I.274, P.275, I.277, P.278
- Chain C: S.105, R.106, W.111, N.114, L.115, F.117, H.132, F.135, S.168, L.169, P.196, I.224, V.225, L.228, P.229, P.230, F.233, I.277, H.280
- Ligands: LTV.9, OCA.12
14 PLIP interactions:2 interactions with chain A, 5 interactions with chain B, 7 interactions with chain C- Hydrophobic interactions: A:I.108, A:I.112, B:I.224, B:I.274, B:P.275, B:I.277, B:P.278, C:W.111, C:W.111, C:L.115, C:V.225, C:V.225
- Hydrogen bonds: C:H.132, C:L.169
- 5 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.4: 3 residues within 4Å:- Chain A: K.120, E.121, R.130
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.121
- Water bridges: A:K.120, A:K.120
- Salt bridges: A:K.120, A:R.130
PO4.5: 6 residues within 4Å:- Chain A: R.197, R.227, P.230, R.231, E.232, N.270
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.231, A:N.270
- Water bridges: A:E.232, A:N.270
- Salt bridges: A:R.197
PO4.10: 4 residues within 4Å:- Chain B: D.84, R.103, R.106, S.107
10 PLIP interactions:10 interactions with chain B- Water bridges: B:N.48, B:D.79, B:D.84, B:R.103, B:R.103, B:R.103, B:R.103, B:R.106, B:R.106
- Salt bridges: B:R.103
PO4.11: 6 residues within 4Å:- Chain B: R.197, R.227, P.230, R.231, E.232, N.270
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.231, B:N.270
- Salt bridges: B:R.197
PO4.16: 6 residues within 4Å:- Chain C: R.197, R.227, P.230, R.231, E.232, N.270
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:R.231, C:N.270
- Water bridges: C:R.227, C:N.270
- Salt bridges: C:R.197
- 2 x CA: CALCIUM ION(Non-covalent)
CA.7: 5 residues within 4Å:- Chain B: N.55, E.67, A.69, D.70, A.71
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:E.67, B:A.69, H2O.17, H2O.19, H2O.21
CA.13: 6 residues within 4Å:- Chain C: N.55, E.67, A.69, D.70, A.71
- Ligands: NAG.14
5 PLIP interactions:2 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:E.67, C:A.69, H2O.27, H2O.29, H2O.31
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McPherson , A. et al., The Crystal Structures of Thermomyces (Humicola) Lanuginosa Lipase in Complex with Enzymatic Reactants. Curr Enzym Inhib (2020)
- Release Date
- 2024-05-01
- Peptides
- Lipase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
DC
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.43 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x OCA: OCTANOIC ACID (CAPRYLIC ACID)(Covalent)
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
- 3 x LTV: 2-hydroxy-3-(octadecanoyloxy)propyl pentacosanoate(Covalent)(Non-covalent)
- 5 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- McPherson , A. et al., The Crystal Structures of Thermomyces (Humicola) Lanuginosa Lipase in Complex with Enzymatic Reactants. Curr Enzym Inhib (2020)
- Release Date
- 2024-05-01
- Peptides
- Lipase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
DC
F