SMTL ID : 6ocq.1 (1 other biounit)

Crystal structure of RIP1 kinase in complex with a pyrrolidine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

monomer

Ligands

1 x M5J: 1-[(2S)-2-(3-fluorophenyl)pyrrolidin-1-yl]-2,2-dimethylpropan-1-one(Non-covalent)

M5J.1: 14 residues within 4Å: Chain A: M.76, L.79, V.85, M.101, L.138, V.143, H.145, I.163, A.164, D.165, L.166, L.168, S.170, F.171 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:M.76, A:L.79, A:L.79, A:L.138, A:I.163, A:L.166, A:L.168 Hydrogen bonds: A:D.165 Halogen bonds: A:S.170

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: I.261, T.262, E.263, Y.264, C.265 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.263, A:C.265

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harris, P.A. et al., Discovery and Lead-Optimization of 4,5-Dihydropyrazoles as Mono-Kinase Selective, Orally Bioavailable and Efficacious Inhibitors of Receptor Interacting Protein 1 (RIP1) Kinase. J.Med.Chem. (2019)

Release Date

2019-05-08

Peptides

Receptor-interacting serine/threonine-protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Receptor-interacting serine/threonine-protein kinase 1

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