SMTL ID : 6oi1.1

Crystal structure of human WDR5 in complex with monomethyl L-arginine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: H.157, K.200 8 PLIP interactions: 8 interactions with chain A Water bridges: A:K.31, A:K.31, A:N.115, A:K.200, A:K.200, A:K.200 Salt bridges: A:H.157, A:K.200

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: I.134, L.143, K.144, T.179, A.180 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.144, A:T.179 GOL.3: 4 residues within 4Å: Chain A: A.21, G.22, K.49, F.58 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.49

1 x NMM: (2S)-2-amino-5-[(N-methylcarbamimidoyl)amino]pentanoic acid(Non-covalent)

NMM.4: 10 residues within 4Å: Chain A: S.28, S.70, D.71, F.112, C.113, S.154, Y.239, C.240, F.242, I.284 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.112, A:I.284 Hydrogen bonds: A:S.70, A:S.70, A:S.70 Water bridges: A:S.70 Salt bridges: A:D.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lorton, B.M. et al., A Binary Arginine Methylation Switch on Histone H3 Arginine 2 Regulates Its Interaction with WDR5. Biochemistry (2020)

Release Date

2020-04-01

Peptides

WD repeat-containing protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

WD repeat-containing protein 5

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