SMTL ID : 6oi3.1

Crystal structure of human WDR5 in complex with monomethyl H3R2 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

hetero-1-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: K.105, G.106, R.133, C.142, T.145 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.105, A:R.133, A:T.145, A:T.145 Water bridges: A:C.142, A:C.142, A:C.142 GOL.2: 4 residues within 4Å: Chain A: I.134, K.144, T.179, A.180 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.144 GOL.3: 6 residues within 4Å: Chain A: Y.207, L.228, K.229, L.267, Q.268 Ligands: SO4.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.268, A:Q.268 Water bridges: A:K.229, A:K.229

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: N.204, K.206, Y.207 Ligands: GOL.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.204, A:Y.207, A:Y.207 Salt bridges: A:K.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lorton, B.M. et al., A Binary Arginine Methylation Switch on Histone H3 Arginine 2 Regulates Its Interaction with WDR5. Biochemistry (2020)

Release Date

2020-04-01

Peptides

WD repeat-containing protein 5: A
Monomethyl H3R2 peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

WD repeat-containing protein 5

Monomethyl H3R2 peptide

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