SMTL ID : 6p5v.1

Structure of DCN1 bound to N-((4S,5S)-7-ethyl-4-(4-fluorophenyl)-3-methyl-6-oxo-1-phenyl-4,5,6,7-tetrahydro-1H-pyrazolo[3,4-b]pyridin-5-yl)-3-methylbenzamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 5 residues within 4Å: Chain A: V.125, F.126, Q.127, M.128, G.129 No protein-ligand interaction detected (PLIP)

1 x O37: N-[(4S,5S)-1-[(1S)-cyclohex-3-en-1-yl]-7-ethyl-4-(4-fluorophenyl)-3-methyl-6-oxo-4,5,6,7-tetrahydro-1H-pyrazolo[3,4-b]pyridin-5-yl]-3-methylbenzamide(Non-covalent)

O37.2: 23 residues within 4Å: Chain A: I.208, I.211, Q.212, F.214, C.215, P.222, A.223, S.224, I.225, V.227, L.228, I.230, A.231, A.236, T.238, Q.239, C.240, E.241, F.242, F.289, A.305, Y.306, L.309 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.211, A:I.211, A:P.222, A:V.227, A:I.230, A:A.231, A:A.236, A:F.242, A:F.289, A:A.305, A:Y.306, A:L.309 Hydrogen bonds: A:C.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, H.S. et al., Discovery of Novel Pyrazolo-pyridone DCN1 Inhibitors Controlling Cullin Neddylation. J.Med.Chem. (2019)

Release Date

2019-09-11

Peptides

Lysozyme,DCN1-like protein 1 fusion: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme,DCN1-like protein 1 fusion

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