SMTL ID : 6pu8.1

Room temperature X-ray structure of HIV-1 protease triple mutant (V32I,I47V,V82I) with tetrahedral intermediate of keto-darunavir

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

1 x P3V: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(2S)-4-{[(4-aminophenyl)sulfonyl](2-methylpropyl)amino}-3,3-dihydroxy-1-phenylbutan-2-yl]carbamate(Non-covalent)

P3V.1: 26 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.29, D.30, I.32, V.47, G.48, G.49, P.81, I.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, I.32, V.47, G.48, G.49, I.50, I.82, I.84 26 PLIP interactions: 13 interactions with chain B, 13 interactions with chain A Hydrophobic interactions: B:L.23, B:V.47, B:I.82, B:I.84, A:L.23, A:A.28, A:I.32, A:V.47, A:P.81, A:I.82, A:I.84 Hydrogen bonds: B:G.27, B:G.27, B:D.29, B:D.30, B:D.30, A:D.25, A:D.29, A:D.30, A:D.30, A:I.50 Water bridges: B:D.29, B:I.50, B:I.50 Salt bridges: B:D.25, A:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, M. et al., Visualizing Tetrahedral Oxyanion Bound in HIV-1 Protease Using Neutrons: Implications for the Catalytic Mechanism and Drug Design. Acs Omega (2020)

Release Date

2020-06-24

Peptides

HIV-1 protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIV-1 protease

Related Entries With Identical Sequence