SMTL ID : 6q4k.1

CDK2 in complex with FragLite38

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.06 Å

Oligo State

monomer

Ligands

2 x HHW: (~{E})-3-[3-[(4-chlorophenyl)carbamoyl]phenyl]prop-2-enoic acid(Non-covalent)

HHW.1: 9 residues within 4Å: Chain A: T.105, G.106, I.107, P.108, L.109, I.112, V.205, P.262, L.263 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.108, A:L.109, A:I.112, A:P.262 Hydrogen bonds: A:I.107, A:L.109 HHW.2: 4 residues within 4Å: Chain A: F.221, R.225, P.249, W.251 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.221, A:P.249, A:W.251 Hydrogen bonds: A:W.251 Salt bridges: A:R.225

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: I.18, A.39, V.72, E.89, F.90, L.91, L.142 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.89, A:L.91, A:L.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wood, D.J. et al., FragLites-Minimal, Halogenated Fragments Displaying Pharmacophore Doublets. An Efficient Approach to Druggability Assessment and Hit Generation. J.Med.Chem. (2019)

Release Date

2019-03-20

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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