SMTL ID : 6q9f.1

Aspartyl/Asparaginyl beta-hydroxylase (AspH) H679A in complex with Mn, NOG and Factor X peptide fragment (39mer-4Ser)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: R.359, D.392, H.396 Chain B: D.18 Ligands: OGA.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.396, H2O.3, H2O.8, H2O.10

1 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.2: 16 residues within 4Å: Chain A: W.296, Q.298, S.339, M.341, R.359, H.361, I.373, W.382, F.390, D.392, H.396, V.398, R.406, I.408, I.410 Ligands: MN.1 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:W.296, A:S.339, A:S.339, A:D.392 Water bridges: A:R.359, A:R.359, A:R.359, A:R.359 Salt bridges: A:R.359, A:H.361, A:H.361, A:H.396, A:R.406

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: M.276, K.280, F.283, D.295, S.297, I.340, H.342 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.342 Water bridges: A:M.276 GOL.4: 6 residues within 4Å: Chain A: S.126, N.129, D.130, F.160, P.191, G.192 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.129, A:D.130, A:D.130 Water bridges: A:T.125, A:D.158 GOL.5: 6 residues within 4Å: Chain A: A.171, D.287, E.288, N.289 Chain B: G.21, E.22 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:A.171, B:E.22, B:E.22 Water bridges: A:N.289

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pfeffer, I. et al., Aspartyl/Asparaginyl beta-hydroxylase (AspH) H679A in complex with Mn, NOG and Factor X peptide fragment (39mer-4Ser). To Be Published

Release Date

2020-01-15

Peptides

Aspartyl/asparaginyl beta-hydroxylase: A
Coagulation factor X: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aspartyl/asparaginyl beta-hydroxylase

Coagulation factor X

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