SMTL ID : 8re5.1

Aspartyl/Asparaginyl beta-hydroxylase (AspH) R735Q variant in complex with Mn, 2-oxosuberate and a Factor X derived peptide fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

2 x YQX: 2-oxidanylideneoctanedioic acid(Non-covalent)

YQX.1: 16 residues within 4Å: Chain A: W.311, S.354, I.355, M.356, H.365, R.374, H.376, F.405, D.407, H.411, V.413, Q.421, L.422, I.423, I.425 Ligands: MN.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.311, A:M.356, A:V.413, A:I.423 Hydrogen bonds: A:M.356, A:D.407, A:Q.421, A:I.423 Water bridges: A:R.374, A:R.374 Salt bridges: A:R.374, A:H.376, A:H.411 YQX.2: 5 residues within 4Å: Chain A: K.295, F.298, S.312, I.355, H.357 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.298, A:I.355 Salt bridges: A:K.295, A:K.295, A:H.357

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 3 residues within 4Å: Chain A: H.365, H.411 Ligands: YQX.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.365, A:H.411, H2O.6, H2O.17

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: Y.57, P.58, Q.59 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brasnett, A. et al., Aspartyl/Asparaginyl beta-hydroxylase (AspH) R735Q variant in complex with Mn, 2-oxosuberate and a Factor X derived peptide fragment. To Be Published

Release Date

2024-12-18

Peptides

Aspartyl/asparaginyl beta-hydroxylase: A
Coagulation factor X: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aspartyl/asparaginyl beta-hydroxylase

Coagulation factor X

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