SMTL ID : 8re9.1

Aspartyl/Asparaginyl beta-hydroxylase (AspH) in complex with Mn, 2-oxoglutarate and a Factor X derived peptide fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

hetero-1-1-mer

Ligands

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.1: 15 residues within 4Å: Chain A: W.311, S.354, M.356, H.365, R.374, H.376, W.397, F.405, H.411, V.413, R.421, I.423, I.425 Chain B: D.18 Ligands: MN.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.311, A:V.413 Hydrogen bonds: A:S.354, A:S.354 Water bridges: A:K.352, A:D.407 Salt bridges: A:R.374, A:H.376, A:H.376, A:H.411, A:R.421

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: H.365, H.411 Chain B: D.18 Ligands: AKG.1 4 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:D.18, A:H.365, A:H.411, H2O.14

6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 4 residues within 4Å: Chain A: K.387, T.394, W.414 Ligands: PEG.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.387, A:T.394 PEG.4: 4 residues within 4Å: Chain A: K.387, T.394, K.395 Ligands: PEG.3 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.396 PEG.5: 4 residues within 4Å: Chain A: R.306, E.307, K.308, G.309 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.306, A:G.309 Water bridges: A:N.188, A:N.188, A:N.188 PEG.6: 3 residues within 4Å: Chain A: Y.230, W.246 Ligands: PEG.7 No protein-ligand interaction detected (PLIP) PEG.7: 4 residues within 4Å: Chain A: W.246, P.260, N.392 Ligands: PEG.6 No protein-ligand interaction detected (PLIP) PEG.8: 5 residues within 4Å: Chain A: K.265, E.266, T.267, G.268, P.431 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brasnett, A. et al., Aspartyl/Asparaginyl beta-hydroxylase (AspH) in complex with Mn, 2-oxoglutarate and a Factor X derived peptide fragment. To Be Published

Release Date

2024-12-18

Peptides

Aspartyl/asparaginyl beta-hydroxylase: A
Coagulation factor X: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aspartyl/asparaginyl beta-hydroxylase

Coagulation factor X

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