SMTL ID : 5jtc.1

Aspartyl/Asparaginyl beta-hydroxylase (AspH)oxygenase and TPR domains in complex with manganese, 2,4-pyridine dicarboxylate and factor X substrate peptide fragment(39mer-4Ser)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.350, H.396 Chain B: D.18 Ligands: PD2.2 4 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:H.350, A:H.396, B:D.18, H2O.8

1 x PD2: PYRIDINE-2,4-DICARBOXYLIC ACID(Non-covalent)

PD2.2: 14 residues within 4Å: Chain A: W.296, S.339, M.341, H.350, R.359, H.361, F.390, H.396, V.398, R.406, I.408, I.410 Chain B: D.18 Ligands: MN.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.296, A:V.398 Hydrogen bonds: A:S.339 Water bridges: A:W.296, A:S.339 Salt bridges: A:R.359, A:H.361, A:H.361, A:H.396, A:R.406

1 x BR: BROMIDE ION(Non-covalent)

BR.3: 2 residues within 4Å: Chain A: L.282, N.310 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: K.91, F.121, P.122, N.123, D.124 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.91, A:K.91, A:N.123, A:N.123, A:N.123, A:D.124, A:D.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brewitz, L. et al., Aspartate/asparagine-beta-hydroxylase: a high-throughput mass spectrometric assay for discovery of small molecule inhibitors. Sci Rep (2020)

Release Date

2017-05-24

Peptides

Aspartyl/asparaginyl beta-hydroxylase: A
Coagulation factor X: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aspartyl/asparaginyl beta-hydroxylase

Coagulation factor X

Related Entries With Identical Sequence