- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.02 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x JRK: prFMN cofactor and butynoic acid adduct(Non-covalent)
- 2 x BYN: hydroxylated prenyl-FMN(Non-covalent)
BYN.2: 23 residues within 4Å:- Chain A: T.153, N.168, W.169, S.170, I.171, A.172, R.173, L.185, Q.190, H.191, S.223, S.224, M.225, P.226, E.233, C.316, E.322, T.323, I.327, K.391
- Ligands: JRK.1, MN.3, K.4
17 PLIP interactions:17 interactions with chain A- Hydrophobic interactions: A:I.171, A:I.171, A:R.173, A:I.327, A:I.327
- Hydrogen bonds: A:I.171, A:I.171, A:R.173, A:Q.190, A:H.191, A:S.224
- Water bridges: A:S.170, A:I.192, A:K.391, A:K.391
- Salt bridges: A:H.191, A:K.391
BYN.7: 23 residues within 4Å:- Chain B: T.153, N.168, W.169, S.170, I.171, A.172, R.173, L.185, Q.190, H.191, S.223, S.224, M.225, P.226, E.233, C.316, E.322, T.323, I.327, K.391
- Ligands: JRK.6, MN.8, K.9
17 PLIP interactions:17 interactions with chain B- Hydrophobic interactions: B:I.171, B:I.171, B:R.173, B:I.327, B:I.327
- Hydrogen bonds: B:I.171, B:I.171, B:R.173, B:Q.190, B:H.191, B:S.224
- Water bridges: B:S.170, B:I.192, B:K.391, B:K.391
- Salt bridges: B:H.191, B:K.391
- 2 x MN: MANGANESE (II) ION(Non-covalent)
MN.3: 6 residues within 4Å:- Chain A: N.168, H.191, E.233
- Ligands: JRK.1, BYN.2, K.4
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.191, A:E.233, H2O.1, H2O.6
MN.8: 6 residues within 4Å:- Chain B: N.168, H.191, E.233
- Ligands: JRK.6, BYN.7, K.9
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:H.191, B:E.233, H2O.20, H2O.24
- 4 x K: POTASSIUM ION(Non-covalent)
K.4: 8 residues within 4Å:- Chain A: W.169, A.222, S.223, M.225, E.233
- Ligands: JRK.1, BYN.2, MN.3
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:A.222, A:M.225, A:E.233
K.5: 4 residues within 4Å:- Chain A: R.421, D.427, D.459, L.461
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:R.421, A:D.427, A:D.459, A:L.461, H2O.31
K.9: 8 residues within 4Å:- Chain B: W.169, A.222, S.223, M.225, E.233
- Ligands: JRK.6, BYN.7, MN.8
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:A.222, B:M.225, B:E.233
K.10: 4 residues within 4Å:- Chain B: R.421, D.427, D.459, L.461
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:R.421, B:D.427, B:D.459, B:L.461, H2O.13
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bailey, S.S. et al., Atomic description of an enzyme reaction dependent on reversible 1,3-dipolar cycloaddition. To be published
- Release Date
- 2019-08-28
- Peptides
- Ferulic acid decarboxylase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.02 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x JRK: prFMN cofactor and butynoic acid adduct(Non-covalent)
- 2 x BYN: hydroxylated prenyl-FMN(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bailey, S.S. et al., Atomic description of an enzyme reaction dependent on reversible 1,3-dipolar cycloaddition. To be published
- Release Date
- 2019-08-28
- Peptides
- Ferulic acid decarboxylase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A