SMTL ID : 6s71.2 (1 other biounit)

Crystal structure of CARM1 in complex with inhibitor WH5C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

homo-dimer

Ligands

2 x KYE: (2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(5-carbamimidamidopentyl)amino]-2-azanyl-butanoic acid(Non-covalent)

KYE.1: 27 residues within 4Å: Chain A: Y.15, F.16, Y.19, Q.25, M.28, R.34, G.58, C.59, G.60, S.61, I.63, L.64, E.80, A.81, S.82, G.106, K.107, V.108, E.109, E.123, M.125, Y.127, E.132, M.134, S.137, H.280, W.281 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:Y.19, A:Y.19, A:Q.25, A:Q.25, A:G.60, A:S.61, A:E.80, A:A.81, A:S.82, A:V.108, A:E.109, A:E.123, A:Y.127, A:S.137 Water bridges: A:R.6, A:L.64, A:E.123, A:Y.127 Salt bridges: A:R.34, A:E.123, A:E.132 pi-Stacking: A:F.16 pi-Cation interactions: A:Y.127 KYE.4: 23 residues within 4Å: Chain B: Y.15, F.16, Y.19, Q.25, M.28, R.34, G.58, C.59, G.60, L.64, E.80, A.81, S.82, G.106, K.107, V.108, E.109, E.123, M.125, M.134, S.137, H.280, W.281 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:E.123 Hydrogen bonds: B:Q.25, B:G.60, B:S.61, B:E.80, B:A.81, B:V.108, B:E.109, B:E.123, B:E.123, B:S.137 Water bridges: B:R.6, B:R.34, B:R.34, B:G.62, B:L.64, B:E.123 Salt bridges: B:R.34, B:E.123, B:E.123 pi-Stacking: B:F.16, B:F.16 pi-Cation interactions: B:W.281, B:W.281

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: D.258, S.271 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.271, A:S.271 GOL.3: 4 residues within 4Å: Chain A: Q.14, Y.15, F.18, E.132 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.14, A:Q.14, A:E.132 GOL.5: 3 residues within 4Å: Chain B: Q.14, F.18, E.132 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.14, B:Q.14, B:E.132 GOL.6: 2 residues within 4Å: Chain B: D.258, W.269 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gunnell, E.A. et al., Structural and biochemical evaluation of bisubstrate inhibitors of protein arginine N-methyltransferases PRMT1 and CARM1 (PRMT4). Biochem.J. (2020)

Release Date

2020-03-04

Peptides

Histone-arginine methyltransferase CARM1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Histone-arginine methyltransferase CARM1

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