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SMTL ID : 6s74.2
(1 other biounit)
Crystal structure of CARM1 in complex with inhibitor UM305
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.10 Å
Oligo State
homo-dimer
Ligands
2 x
KY8
:
(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[3-azanylpropyl-[3-(pyrimidin-2-ylamino)propyl]amino]methyl]oxolane-3,4-diol
(Non-covalent)
KY8.1:
26 residues within 4Å:
Chain A:
F.3
,
Y.15
,
F.16
,
Y.19
,
Q.25
,
M.28
,
M.29
,
R.34
,
T.35
,
G.58
,
C.59
,
G.60
,
I.63
,
L.64
,
E.80
,
A.81
,
S.82
,
G.106
,
K.107
,
V.108
,
E.109
,
E.123
,
M.125
,
M.134
,
S.137
,
W.281
15
PLIP interactions
:
15 interactions with chain A
Hydrophobic interactions:
A:Y.19
,
A:I.63
Hydrogen bonds:
A:Q.25
,
A:R.34
,
A:A.81
,
A:S.82
,
A:V.108
,
A:E.109
,
A:S.137
,
A:W.281
Water bridges:
A:G.58
,
A:G.62
,
A:E.123
Salt bridges:
A:E.123
pi-Stacking:
A:F.16
KY8.2:
25 residues within 4Å:
Chain B:
F.3
,
Y.15
,
F.16
,
Y.19
,
Q.25
,
M.28
,
R.34
,
G.58
,
C.59
,
G.60
,
E.80
,
A.81
,
G.106
,
K.107
,
V.108
,
E.109
,
E.123
,
M.125
,
G.126
,
Y.127
,
E.132
,
M.134
,
S.137
,
H.280
,
W.281
20
PLIP interactions
:
20 interactions with chain B
Hydrophobic interactions:
B:Y.19
Hydrogen bonds:
B:Y.15
,
B:Y.19
,
B:Q.25
,
B:R.34
,
B:R.34
,
B:G.58
,
B:G.60
,
B:A.81
,
B:V.108
,
B:E.109
,
B:E.132
,
B:S.137
Water bridges:
B:R.6
,
B:L.64
,
B:E.123
,
B:E.132
Salt bridges:
B:E.123
pi-Stacking:
B:F.16
,
B:Y.127
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Gunnell, E.A. et al., Structural and biochemical evaluation of bisubstrate inhibitors of protein arginine N-methyltransferases PRMT1 and CARM1 (PRMT4). Biochem.J. (2020)
Release Date
2020-03-04
Peptides
Histone-arginine methyltransferase CARM1:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
B
B
D
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Histone-arginine methyltransferase CARM1
Toggle Identical (AB)
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|
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|
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|
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