SMTL ID : 6s7c.1 (1 other biounit)

Crystal structure of CARM1 in complex with inhibitor UM079

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x KY2: 1-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(3-azanylpropyl)amino]propyl]guanidine(Non-covalent)

KY2.1: 25 residues within 4Å: Chain A: F.3, Y.15, F.16, Y.19, Q.25, M.28, R.34, G.58, C.59, G.60, L.64, E.80, A.81, S.82, G.106, K.107, V.108, E.109, E.123, M.125, G.126, E.132, M.134, S.137, W.281 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:Y.19 Hydrogen bonds: A:Y.15, A:Y.19, A:Q.25, A:R.34, A:G.58, A:G.60, A:A.81, A:S.82, A:V.108, A:E.109, A:M.125, A:S.137 Water bridges: A:E.123, A:Y.127 Salt bridges: A:E.123, A:E.132 pi-Stacking: A:F.16 pi-Cation interactions: A:Y.127 KY2.2: 22 residues within 4Å: Chain B: F.3, Y.15, F.16, Y.19, M.28, R.34, G.58, G.60, E.80, A.81, S.82, G.106, K.107, V.108, E.109, E.123, M.125, G.126, E.132, M.134, S.137, W.281 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:R.34, B:G.58, B:G.60, B:A.81, B:S.82, B:V.108, B:E.109, B:E.123, B:M.125, B:S.137 Water bridges: B:R.6, B:L.64, B:Y.127 Salt bridges: B:E.123, B:E.132 pi-Stacking: B:F.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gunnell, E.A. et al., Structural and biochemical evaluation of bisubstrate inhibitors of protein arginine N-methyltransferases PRMT1 and CARM1 (PRMT4). Biochem.J. (2020)

Release Date

2020-03-04

Peptides

Histone-arginine methyltransferase CARM1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Histone-arginine methyltransferase CARM1

Related Entries With Identical Sequence