SMTL ID : 6s7b.2 (1 other biounit)

Crystal structure of CARM1 in complex with inhibitor UM249

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.66 Å

Oligo State

homo-dimer

Ligands

2 x KYH: 1-[4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(3-azanylpropyl)amino]butyl]guanidine(Non-covalent)

KYH.1: 24 residues within 4Å: Chain A: Y.15, F.16, Y.19, M.28, R.34, G.58, C.59, G.60, V.79, E.80, A.81, S.82, G.106, K.107, V.108, E.109, E.123, M.125, Y.127, E.132, M.134, S.137, H.280, W.281 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:Q.25, A:R.34, A:G.60, A:A.81, A:S.82, A:S.82, A:S.82, A:V.108, A:E.109, A:S.137 Water bridges: A:R.6, A:Y.127, A:E.132 Salt bridges: A:E.123, A:E.132 pi-Stacking: A:F.16 pi-Cation interactions: A:Y.127 KYH.2: 22 residues within 4Å: Chain B: Y.15, F.16, Y.19, R.34, G.58, C.59, G.60, V.79, E.80, A.81, S.82, G.106, K.107, V.108, E.109, E.123, M.125, Y.127, E.132, M.134, S.137, W.281 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:Y.19 Hydrogen bonds: B:Y.19, B:R.34, B:C.59, B:A.81, B:S.82, B:S.82, B:V.108, B:E.109, B:S.137 Water bridges: B:E.123 Salt bridges: B:E.132 pi-Stacking: B:F.16 pi-Cation interactions: B:Y.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gunnell, E.A. et al., Structural and biochemical evaluation of bisubstrate inhibitors of protein arginine N-methyltransferases PRMT1 and CARM1 (PRMT4). Biochem.J. (2020)

Release Date

2020-03-04

Peptides

Histone-arginine methyltransferase CARM1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Histone-arginine methyltransferase CARM1

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