SMTL ID : 6sak.1 (1 other biounit)

Structure of the OTULINcat C129A - SNX27 PDZ domain complex.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 11 residues within 4Å: Chain A: W.71, L.77, L.80, L.158, N.161, R.162, Y.219, A.220, V.221, R.222 Ligands: SO4.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.220 GOL.2: 8 residues within 4Å: Chain A: W.90, Q.93, D.191, P.192, G.193, Q.194, R.197 Ligands: SO4.8 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.191, A:G.193, A:Q.194, A:R.197, A:R.197 GOL.3: 10 residues within 4Å: Chain A: R.186, N.198, H.199, Q.202, V.203, G.207, G.208, L.209, E.210, E.213 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.199, A:G.208, A:E.210, A:E.210, A:E.210 GOL.4: 7 residues within 4Å: Chain A: L.3, S.4, V.5, A.6, R.45, V.46, R.47 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.47 GOL.5: 3 residues within 4Å: Chain A: M.78, T.116, R.119 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.116, A:R.119

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 7 residues within 4Å: Chain A: P.69, P.70, W.71, R.222, D.249, W.250, P.251 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.71, A:D.249, A:D.249 Water bridges: A:W.250, A:W.250 SO4.7: 5 residues within 4Å: Chain A: R.162, Y.219, R.222, W.250 Ligands: GOL.1 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.162, A:R.162, A:W.250 Salt bridges: A:R.162, A:R.222 SO4.8: 8 residues within 4Å: Chain A: Y.88, W.90, I.164, Y.167, N.168, D.191, P.192 Ligands: GOL.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.90, A:N.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stangl, A. et al., Regulation of the endosomal SNX27-retromer by OTULIN. Nat Commun (2019)

Release Date

2019-10-02

Peptides

Ubiquitin thioesterase otulin: A
Sorting nexin-27: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Ubiquitin thioesterase otulin

Sorting nexin-27

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