SMTL ID : 6sak.2 (1 other biounit)

Structure of the OTULINcat C129A - SNX27 PDZ domain complex.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: W.90, D.191, P.192, G.193, Q.194, R.197 Ligands: SO4.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.193, A:R.197, A:R.197 GOL.2: 8 residues within 4Å: Chain A: N.198, H.199, V.203, G.207, G.208, L.209, E.210, E.213 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.199, A:G.208, A:E.210, A:E.213 Water bridges: A:G.208 GOL.3: 5 residues within 4Å: Chain A: E.35, Y.233, N.234, T.235, F.238 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.233, A:N.234, A:T.235 GOL.4: 5 residues within 4Å: Chain A: R.229, S.231, K.232, D.259, D.260 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.231, A:K.232, A:D.260 Water bridges: A:D.260

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 7 residues within 4Å: Chain A: W.71, L.158, N.161, R.162, Y.219, A.220, R.222 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.161, A:A.220 Water bridges: A:R.222, A:R.222 Salt bridges: A:R.222 SO4.6: 6 residues within 4Å: Chain A: P.70, W.71, R.222, D.249, W.250, P.251 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.250 Water bridges: A:W.71, A:R.222, A:D.249, A:D.249 SO4.7: 7 residues within 4Å: Chain A: Y.88, W.90, I.164, Y.167, N.168, P.192 Ligands: GOL.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stangl, A. et al., Regulation of the endosomal SNX27-retromer by OTULIN. Nat Commun (2019)

Release Date

2019-10-02

Peptides

Ubiquitin thioesterase otulin: A
Sorting nexin-27: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Ubiquitin thioesterase otulin

Sorting nexin-27

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