SMTL ID : 6sqs.1

Crystal structure of cat phospho-Ser429 MDM2 RING domain bound to UbcH5B-Ub

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

hetero-2-2-2-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.11, C.14, R.17, C.34, C.37 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.11, A:C.14, A:C.34, A:C.37 ZN.2: 4 residues within 4Å: Chain A: H.25, H.30, C.48, C.51 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.25, A:H.30, A:C.48, A:C.51 ZN.3: 5 residues within 4Å: Chain D: C.11, C.14, R.17, C.34, C.37 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.11, D:C.14, D:C.34, D:C.37 ZN.4: 4 residues within 4Å: Chain D: H.25, H.30, C.48, C.51 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.25, D:H.30, D:C.48, D:C.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Magnussen, H.M. et al., Structural basis for DNA damage-induced phosphoregulation of MDM2 RING domain. Nat Commun (2020)

Release Date

2020-05-06

Peptides

E3 ubiquitin-protein ligase Mdm2: AD
Ubiquitin-conjugating enzyme E2 D2: BE
Ubiquitin-40S ribosomal protein S27a: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

E
E

C
C

F
F

E3 ubiquitin-protein ligase Mdm2

Ubiquitin-conjugating enzyme E2 D2

Ubiquitin-40S ribosomal protein S27a

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