SMTL ID : 6tn0.1

Rapid optimisation of fragments and hits to lead compounds from screening of crude reaction mixtures

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

1 x TF3: N-(2-AMINOETHYL)-2-{3-CHLORO-4-[(4-ISOPROPYLBENZYL)OXY]PHENYL} ACETAMIDE(Non-covalent)

TF3.1: 17 residues within 4Å: Chain A: L.58, P.59, R.61, V.62, T.65, S.67, V.68, M.117, G.120, V.121, Y.124, V.133, S.134, N.137, I.138, F.141, L.142 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.62, A:V.62, A:V.68, A:V.121, A:Y.124, A:Y.124, A:Y.124, A:N.137, A:I.138, A:F.141, A:L.142 Hydrogen bonds: A:R.61 pi-Cation interactions: A:R.61

1 x NLZ: 2,4-bis(oxidanyl)benzamide(Non-covalent)

NLZ.2: 13 residues within 4Å: Chain A: L.239, N.242, A.243, R.245, A.246, D.277, G.281, V.282, L.290, L.317, L.333, T.341, A.343 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:T.341 Hydrogen bonds: A:D.277, A:T.341 Water bridges: A:N.242, A:A.246, A:G.279, A:G.281

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 5 residues within 4Å: Chain A: I.287, F.291, Q.332, L.333, F.334 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.333 pi-Cation interactions: A:F.334

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: F.26, S.36, L.40, Q.158 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baker, L.M. et al., Rapid optimisation of fragments and hits to lead compounds from screening of crude reaction mixtures. Commun Chem (2020)

Release Date

2020-10-14

Peptides

[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial

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