SMTL ID : 6u62.1

Raptor-Rag-Ragulator complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-mer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 20 residues within 4Å: Chain B: S.16, G.17, S.18, G.19, K.20, T.21, S.22, T.36, R.37, L.39, A.41, T.42, G.65, H.127, K.128, D.130, S.163, I.164, W.165 Ligands: MG.2 21 PLIP interactions: 21 interactions with chain B Hydrogen bonds: B:S.16, B:G.17, B:S.18, B:S.18, B:G.19, B:K.20, B:T.21, B:S.22, B:S.22, B:T.36, B:T.36, B:T.42, B:T.42, B:G.65, B:K.128, B:K.128, B:I.164 Salt bridges: B:K.20, B:K.20, B:D.130 pi-Cation interactions: B:K.128

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain B: T.21, T.42, D.62 Ligands: GTP.1 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:T.21, B:T.42

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 16 residues within 4Å: Chain A: P.934, E.935 Chain C: L.70, R.72, S.73, G.74, K.75, N.76, S.77, Q.148, H.179, K.180, D.182, S.220, I.221, Y.222 17 PLIP interactions: 16 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:R.72, C:S.73, C:G.74, C:K.75, C:N.76, C:S.77, C:Q.148, C:K.180, C:K.180, C:I.221, C:Y.222 Salt bridges: C:R.72, C:K.75, C:D.182, A:E.935 pi-Stacking: C:Y.222 pi-Cation interactions: C:K.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rogala, K.B. et al., Structural basis for the docking of mTORC1 on the lysosomal surface. Science (2019)

Release Date

2019-10-30

Peptides

Regulatory-associated protein of mTOR: A
Ras-related GTP-binding protein A: B
Ras-related GTP-binding protein C: C
Ragulator complex protein LAMTOR1: D
Ragulator complex protein LAMTOR2: E
Ragulator complex protein LAMTOR3: F
Ragulator complex protein LAMTOR4: G
Ragulator complex protein LAMTOR5: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Regulatory-associated protein of mTOR

Ras-related GTP-binding protein A

Ras-related GTP-binding protein C

Ragulator complex protein LAMTOR1

Ragulator complex protein LAMTOR2

Ragulator complex protein LAMTOR3

Ragulator complex protein LAMTOR4

Ragulator complex protein LAMTOR5

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