SMTL ID : 6v6w.1 (1 other biounit)

Crystal structure of antibody 438-B11 DSS mutant (Cys98A-100aA) in complex with an uncleaved prefusion optimized (UFO) soluble BG505 trimer and Fab 35O22

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 6.50 Å
Oligo State
hetero-3-3-3-3-3-3-mer
Ligands
3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
36 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Kumar, S. et al., A VH1-69 antibody lineage from an infected Chinese donor potently neutralizes HIV-1 by targeting the V3 glycan supersite. Sci Adv (2020)
Release Date
2020-09-23
Peptides
35O22 Fab Heavy chain: AGM
35O22 Fab Light chain: BHN
Envelope glycoprotein gp120: CIO
B11 DSS Fab heavy chain: DJP
B11 Fab light chain: EKQ
Envelope glycoprotein gp41: FLR
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
D
G
D
M
D
B
E
H
E
N
E
C
G
I
G
O
G
D
I
J
I
P
I
E
J
K
J
Q
J
F
T
L
T
R
T

35O22 Fab Heavy chain

Toggle Identical (AGM)

35O22 Fab Light chain

Toggle Identical (BHN)

Envelope glycoprotein gp120

Toggle Identical (CIO)

B11 DSS Fab heavy chain

Toggle Identical (DJP)

B11 Fab light chain

Toggle Identical (EKQ)

Envelope glycoprotein gp41

Toggle Identical (FLR)

Related Entries With Identical Sequence

4toy.1 | 4tvp.1 | 5cez.2 | 5fyj.1 | 5fyk.1 | 5fyl.1 | 5js9.1 | 5t3s.1 | 5u7m.1 | 5u7o.1 | 5um8.1 | 5utf.1 | 5uty.1 | 5v7j.1 | 5w6d.1 | 6ce0.1 | 6ch7.1 | 6ch8.1 | 6ch9.1 | 6de7.1 | 6ieq.2 | 6mco.1 | 6mdt.1 | 6opa.1 | 6utk.1 | 6uuh.1 | 6uuh.2 | 6uum.1 | 6uum.2 | 6v6w.2  more...