SMTL ID : 5fyl.1

Crystal Structure at 3.7 A Resolution of Fully Glycosylated HIV-1 Clade A BG505 SOSIP.664 Prefusion Env Trimer in Complex with Broadly Neutralizing Antibodies PGT122 and 35O22

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-3-3-3-3-3-3-mer

Ligands

6 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 2 residues within 4Å: Chain A: E.123, N.126 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.14: 5 residues within 4Å: Chain D: N.332, N.355, S.357 Ligands: NAG-NAG-BMA-MAN-MAN-MAN.15, NAG-NAG-BMA-MAN-MAN-MAN.15 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.23: 2 residues within 4Å: Chain G: E.123, N.126 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.36: 5 residues within 4Å: Chain J: N.332, N.355, S.357 Ligands: NAG-NAG-BMA-MAN-MAN-MAN.37, NAG-NAG-BMA-MAN-MAN-MAN.37 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.45: 2 residues within 4Å: Chain M: E.123, N.126 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.58: 5 residues within 4Å: Chain P: N.332, N.355, S.357 Ligands: NAG-NAG-BMA-MAN-MAN-MAN.59, NAG-NAG-BMA-MAN-MAN-MAN.59 No protein-ligand interaction detected (PLIP)

6 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN.2: 22 residues within 4Å: Chain A: G.16, S.17 Chain B: N.30, F.31, Y.32, H.33, W.50, S.52, Y.54, S.55, D.57, K.58, N.59, R.110, D.111, G.112, S.113, T.115 Chain C: H.95, N.96 Chain D: E.57, N.58 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.115, B:T.115, B:H.33, B:H.33, B:S.52, B:T.115, B:D.111, B:G.112 NAG-NAG-BMA-MAN-MAN-MAN-MAN.4: 14 residues within 4Å: Chain D: N.107 Chain E: S.54, G.55, D.56, N.58, H.100, R.102, K.111, W.113, F.114, T.115 Chain F: D.89, R.92, T.94 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:D.56, E:T.115, E:G.55 NAG-NAG-BMA-MAN-MAN-MAN-MAN.24: 22 residues within 4Å: Chain G: G.16, S.17 Chain H: N.30, F.31, Y.32, H.33, W.50, S.52, Y.54, S.55, D.57, K.58, N.59, R.110, D.111, G.112, S.113, T.115 Chain I: H.95, N.96 Chain J: E.57, N.58 2 PLIP interactions: 2 interactions with chain H Hydrogen bonds: H:T.115, H:T.115, H:H.33, H:H.33, H:S.52, H:T.115, H:D.111, H:G.112 NAG-NAG-BMA-MAN-MAN-MAN-MAN.26: 14 residues within 4Å: Chain J: N.107 Chain K: S.54, G.55, D.56, N.58, H.100, R.102, K.111, W.113, F.114, T.115 Chain L: D.89, R.92, T.94 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:D.56, K:T.115, K:G.55 NAG-NAG-BMA-MAN-MAN-MAN-MAN.46: 22 residues within 4Å: Chain M: G.16, S.17 Chain N: N.30, F.31, Y.32, H.33, W.50, S.52, Y.54, S.55, D.57, K.58, N.59, R.110, D.111, G.112, S.113, T.115 Chain O: H.95, N.96 Chain P: E.57, N.58 2 PLIP interactions: 2 interactions with chain N Hydrogen bonds: N:T.115, N:T.115, N:H.33, N:H.33, N:S.52, N:T.115, N:D.111, N:G.112 NAG-NAG-BMA-MAN-MAN-MAN-MAN.48: 14 residues within 4Å: Chain P: N.107 Chain Q: S.54, G.55, D.56, N.58, H.100, R.102, K.111, W.113, F.114, T.115 Chain R: D.89, R.92, T.94 1 PLIP interactions: 1 interactions with chain Q Hydrogen bonds: Q:D.56, Q:T.115, Q:G.55

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 5 residues within 4Å: Chain D: N.103, D.110, K.117, R.140, K.159 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.110 NAG-NAG.25: 5 residues within 4Å: Chain J: N.103, D.110, K.117, R.140, K.159 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:D.110 NAG-NAG.47: 5 residues within 4Å: Chain P: N.103, D.110, K.117, R.140, K.159 1 PLIP interactions: 1 interactions with chain P Hydrogen bonds: P:D.110

3 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN.5: 7 residues within 4Å: Chain D: V.104, T.105, N.118, S.120, Y.135 Chain F: E.19, E.20 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain F Hydrophobic interactions: D:Y.135 Hydrogen bonds: D:Y.135, F:E.20, F:E.20 NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN.27: 7 residues within 4Å: Chain J: V.104, T.105, N.118, S.120, Y.135 Chain L: E.19, E.20 4 PLIP interactions: 2 interactions with chain J, 2 interactions with chain L Hydrophobic interactions: J:Y.135 Hydrogen bonds: J:Y.135, L:E.20, L:E.20 NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN.49: 7 residues within 4Å: Chain P: V.104, T.105, N.118, S.120, Y.135 Chain R: E.19, E.20 4 PLIP interactions: 2 interactions with chain P, 2 interactions with chain R Hydrophobic interactions: P:Y.135 Hydrogen bonds: P:Y.135, R:E.20, R:E.20

3 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.6: 5 residues within 4Å: Chain D: Q.100, S.120, F.121, N.122, K.133 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.28: 5 residues within 4Å: Chain J: Q.100, S.120, F.121, N.122, K.133 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.50: 5 residues within 4Å: Chain P: Q.100, S.120, F.121, N.122, K.133 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN.7: 5 residues within 4Å: Chain D: V.144, R.162, I.164, N.167 Chain J: R.278 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN.29: 5 residues within 4Å: Chain J: V.144, R.162, I.164, N.167 Chain P: R.278 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN.51: 5 residues within 4Å: Chain D: R.278 Chain P: V.144, R.162, I.164, N.167 No protein-ligand interaction detected (PLIP)

6 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.8: 4 residues within 4Å: Chain D: N.204, S.244, E.245, I.247 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.10: 3 residues within 4Å: Chain D: N.246, T.248, N.249 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.30: 4 residues within 4Å: Chain J: N.204, S.244, E.245, I.247 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.32: 3 residues within 4Å: Chain J: N.246, T.248, N.249 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.52: 4 residues within 4Å: Chain P: N.204, S.244, E.245, I.247 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN.54: 3 residues within 4Å: Chain P: N.246, T.248, N.249 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.9: 12 residues within 4Å: Chain D: K.29, K.35, N.37, E.181, P.182, N.232, R.274, N.346, G.348, V.414, S.415 Ligands: NAG-NAG-BMA-MAN-MAN-MAN.17 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:G.348, D:K.35, D:R.274 NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.31: 12 residues within 4Å: Chain J: K.29, K.35, N.37, E.181, P.182, N.232, R.274, N.346, G.348, V.414, S.415 Ligands: NAG-NAG-BMA-MAN-MAN-MAN.39 2 PLIP interactions: 2 interactions with chain J Hydrogen bonds: J:G.348, J:K.35, J:R.274 NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.53: 12 residues within 4Å: Chain P: K.29, K.35, N.37, E.181, P.182, N.232, R.274, N.346, G.348, V.414, S.415 Ligands: NAG-NAG-BMA-MAN-MAN-MAN.61 2 PLIP interactions: 2 interactions with chain P Hydrogen bonds: P:G.348, P:K.35, P:R.274

3 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN.11: 7 residues within 4Å: Chain D: Q.263, N.265, N.301, V.302, S.303, R.412 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.13 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.33: 7 residues within 4Å: Chain J: Q.263, N.265, N.301, V.302, S.303, R.412 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.35 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN.55: 7 residues within 4Å: Chain P: Q.263, N.265, N.301, V.302, S.303, R.412 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.57 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.12: 3 residues within 4Å: Chain D: N.271, I.292, V.410 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.34: 3 residues within 4Å: Chain J: N.271, I.292, V.410 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.56: 3 residues within 4Å: Chain P: N.271, I.292, V.410 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.13: 17 residues within 4Å: Chain D: T.267, R.296, H.299, N.301, T.383 Chain E: R.103, I.104, Y.105, G.106, V.107 Chain F: S.24, N.44, N.45, P.60, G.61, S.62 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN.11 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain D Hydrogen bonds: E:R.103, D:R.296 NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.35: 17 residues within 4Å: Chain J: T.267, R.296, H.299, N.301, T.383 Chain K: R.103, I.104, Y.105, G.106, V.107 Chain L: S.24, N.44, N.45, P.60, G.61, S.62 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN.33 2 PLIP interactions: 1 interactions with chain K, 1 interactions with chain J Hydrogen bonds: K:R.103, J:R.296 NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN.57: 17 residues within 4Å: Chain P: T.267, R.296, H.299, N.301, T.383 Chain Q: R.103, I.104, Y.105, G.106, V.107 Chain R: S.24, N.44, N.45, P.60, G.61, S.62 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN.55 2 PLIP interactions: 1 interactions with chain Q, 1 interactions with chain P Hydrogen bonds: Q:R.103, P:R.296

6 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN.15: 8 residues within 4Å: Chain D: D.111, N.355, S.357 Ligands: NAG-NAG-BMA.14, NAG-NAG-BMA.14, NAG-NAG-BMA.14, NAG-NAG-BMA-MAN-MAN-MAN.16, NAG-NAG-BMA-MAN-MAN-MAN.16 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.111 NAG-NAG-BMA-MAN-MAN-MAN.16: 4 residues within 4Å: Chain D: N.361 Ligands: NAG-NAG-BMA-MAN-MAN-MAN.15, NAG-NAG-BMA-MAN-MAN-MAN.15, NAG-NAG-BMA-MAN-MAN-MAN.15 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN.37: 8 residues within 4Å: Chain J: D.111, N.355, S.357 Ligands: NAG-NAG-BMA.36, NAG-NAG-BMA.36, NAG-NAG-BMA.36, NAG-NAG-BMA-MAN-MAN-MAN.38, NAG-NAG-BMA-MAN-MAN-MAN.38 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:D.111 NAG-NAG-BMA-MAN-MAN-MAN.38: 4 residues within 4Å: Chain J: N.361 Ligands: NAG-NAG-BMA-MAN-MAN-MAN.37, NAG-NAG-BMA-MAN-MAN-MAN.37, NAG-NAG-BMA-MAN-MAN-MAN.37 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN.59: 8 residues within 4Å: Chain P: D.111, N.355, S.357 Ligands: NAG-NAG-BMA.58, NAG-NAG-BMA.58, NAG-NAG-BMA.58, NAG-NAG-BMA-MAN-MAN-MAN.60, NAG-NAG-BMA-MAN-MAN-MAN.60 1 PLIP interactions: 1 interactions with chain P Hydrogen bonds: P:D.111 NAG-NAG-BMA-MAN-MAN-MAN.60: 4 residues within 4Å: Chain P: N.361 Ligands: NAG-NAG-BMA-MAN-MAN-MAN.59, NAG-NAG-BMA-MAN-MAN-MAN.59, NAG-NAG-BMA-MAN-MAN-MAN.59 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN.17: 4 residues within 4Å: Chain D: N.232, P.261, N.416 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.9 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN.39: 4 residues within 4Å: Chain J: N.232, P.261, N.416 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.31 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-MAN-MAN.61: 4 residues within 4Å: Chain P: N.232, P.261, N.416 Ligands: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.53 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.18: 4 residues within 4Å: Chain E: T.21, N.23, K.75, L.77 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:K.75, E:K.75 Hydrophobic interactions: E:T.21, E:L.77 NAG-NAG-BMA-MAN.40: 4 residues within 4Å: Chain K: T.21, N.23, K.75, L.77 3 PLIP interactions: 3 interactions with chain K Hydrogen bonds: K:K.75, K:K.75 Hydrophobic interactions: K:T.21, K:L.77 NAG-NAG-BMA-MAN.62: 4 residues within 4Å: Chain Q: T.21, N.23, K.75, L.77 3 PLIP interactions: 3 interactions with chain Q Hydrogen bonds: Q:K.75, Q:K.75 Hydrophobic interactions: Q:T.21, Q:L.77

12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.19: 2 residues within 4Å: Chain A: N.100, S.102 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.100, A:S.102 NAG.20: 4 residues within 4Å: Chain A: N.107 Chain C: N.54, E.55, R.56 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:E.55, C:R.56, A:N.107 NAG.21: 2 residues within 4Å: Chain D: N.308, T.363 No protein-ligand interaction detected (PLIP) NAG.22: 3 residues within 4Å: Chain D: R.319, K.320, N.324 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.324 NAG.41: 2 residues within 4Å: Chain G: N.100, S.102 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:N.100, G:S.102 NAG.42: 4 residues within 4Å: Chain G: N.107 Chain I: N.54, E.55, R.56 3 PLIP interactions: 1 interactions with chain G, 2 interactions with chain I Hydrogen bonds: G:N.107, I:E.55, I:R.56 NAG.43: 2 residues within 4Å: Chain J: N.308, T.363 No protein-ligand interaction detected (PLIP) NAG.44: 3 residues within 4Å: Chain J: R.319, K.320, N.324 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:N.324 NAG.63: 2 residues within 4Å: Chain M: N.100, S.102 2 PLIP interactions: 2 interactions with chain M Hydrogen bonds: M:N.100, M:S.102 NAG.64: 4 residues within 4Å: Chain M: N.107 Chain O: N.54, E.55, R.56 3 PLIP interactions: 1 interactions with chain M, 2 interactions with chain O Hydrogen bonds: M:N.107, O:E.55, O:R.56 NAG.65: 2 residues within 4Å: Chain P: N.308, T.363 No protein-ligand interaction detected (PLIP) NAG.66: 3 residues within 4Å: Chain P: R.319, K.320, N.324 1 PLIP interactions: 1 interactions with chain P Hydrogen bonds: P:N.324

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stewart-Jones, G.B.E. et al., Trimeric HIV-1-Env Structures Define Glycan Shields from Clades A, B and G. Cell(Cambridge,Mass.) (2016)

Release Date

2016-04-27

Peptides

BG505 GP120 ENV ECTODOMAIN: AGM
35O22 ANTIBODY FAB HEAVY CHAIN: BHN
35O22 ANTIBODY FAB LIGHT CHAIN: CIO
BG505 GP120 ENV ECTODOMAIN: DJP
PGT122 ANTIBODY FAB HEAVY CHAIN: EKQ
PGT122 ANTIBODY FAB LIGHT CHAIN: FLR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

G
B

M
B

B
D

H
D

N
D

C
E

I
E

O
E

D
G

J
G

P
G

E
H

K
H

Q
H

F
L

L
L

R
L

BG505 GP120 ENV ECTODOMAIN

35O22 ANTIBODY FAB HEAVY CHAIN

35O22 ANTIBODY FAB LIGHT CHAIN

BG505 GP120 ENV ECTODOMAIN

PGT122 ANTIBODY FAB HEAVY CHAIN

PGT122 ANTIBODY FAB LIGHT CHAIN

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