SMTL ID : 6mco.1

Crystal structure of the B41 SOSIP.664 Env trimer with PGT124 and 35O22 Fabs, in P23 space group

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 3.53 Å
Oligo State
hetero-1-1-1-1-1-1-mer
Ligands
1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
4 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Kumar, S. et al., Capturing the inherent structural dynamics of the HIV-1 envelope glycoprotein fusion peptide. Nat Commun (2019)
Release Date
2019-02-27
Peptides
Transmembrane protein gp41: A
35O22 Fab heavy chain: B
35O22 Fab light chain: C
Surface protein gp120: D
PGT124 Fab heavy chain: E
PGT124 Fab light chain: F
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
B
B
D
C
E
D
G
E
H
F
L

Transmembrane protein gp41

35O22 Fab heavy chain

35O22 Fab light chain

Surface protein gp120

PGT124 Fab heavy chain

PGT124 Fab light chain

Related Entries With Identical Sequence

4r26.1 | 4r2g.1 | 4r2g.2 | 4r2g.3 | 4r2g.4 | 4toy.1 | 4tvp.1 | 5cez.2 | 5fyj.1 | 5fyk.1 | 5fyl.1 | 5t3s.1 | 5u7m.1 | 5u7o.1 | 5um8.1 | 5utf.1 | 5uty.1 | 5v7j.1 | 5w6d.1 | 6ce0.1 | 6ch7.1 | 6ch8.1 | 6ch9.1 | 6de7.1 | 6ieq.1 | 6ieq.2 | 6mdt.1 | 6opa.1 | 6utk.1 | 6v6w.1  more...