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SMTL ID : 5cez.2 (1 other biounit)

Crystal Structure of the BG505 SOSIP gp140 HIV-1 Env trimer in Complex with an early putative precursor of the PGT121 family at 3.0 Angstrom

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.03 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1:	1 residues within 4Å: Chain A: N.126 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.126
NAG.2:	2 residues within 4Å: Chain A: N.105, N.107 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.105, A:N.105
NAG.3:	2 residues within 4Å: Chain A: N.100, S.102 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.100, A:S.102

1 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.4:

4 residues within 4Å:

Chain B: D.57, K.58, N.59
Chain C: N.96

3 PLIP interactions:

2 interactions with chain B, 1 interactions with chain C

Hydrogen bonds: B:K.58, B:N.59, C:N.96

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Garces, F. et al., Affinity Maturation of a Potent Family of HIV Antibodies Is Primarily Focused on Accommodating or Avoiding Glycans. Immunity (2015)

Release Date

2015-12-23

Peptides

Envelope glycoprotein gp160: A
35022 Fab Heavy Chain: B
35022 Fab Light Chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C
E

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Envelope glycoprotein gp160

35022 Fab Heavy Chain

35022 Fab Light Chain

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