- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-octamer
- Ligands
- 16 x MN: MANGANESE (II) ION(Non-covalent)
- 8 x QQ4: Hexa Vinylpyrrolidone K15(Non-covalent)
QQ4.3: 4 residues within 4Å:- Chain G: M.32, L.36, F.66, G.82
2 PLIP interactions:2 interactions with chain G- Hydrophobic interactions: G:F.66, G:F.66
QQ4.8: 4 residues within 4Å:- Chain H: M.32, L.36, F.66, G.82
2 PLIP interactions:2 interactions with chain H- Hydrophobic interactions: H:F.66, H:F.66
QQ4.13: 4 residues within 4Å:- Chain E: M.32, L.36, F.66, G.82
2 PLIP interactions:2 interactions with chain E- Hydrophobic interactions: E:F.66, E:F.66
QQ4.18: 4 residues within 4Å:- Chain F: M.32, L.36, F.66, G.82
2 PLIP interactions:2 interactions with chain F- Hydrophobic interactions: F:F.66, F:F.66
QQ4.23: 4 residues within 4Å:- Chain C: M.32, L.36, F.66, G.82
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:F.66, C:F.66
QQ4.28: 4 residues within 4Å:- Chain D: M.32, L.36, F.66, G.82
2 PLIP interactions:2 interactions with chain D- Hydrophobic interactions: D:F.66, D:F.66
QQ4.33: 4 residues within 4Å:- Chain A: M.32, L.36, F.66, G.82
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:F.66, A:F.66
QQ4.38: 4 residues within 4Å:- Chain B: M.32, L.36, F.66, G.82
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:F.66, B:F.66
- 8 x QVV: benzyl [2-(4-{[2-(6-amino-9H-purin-9-yl)ethyl]carbamoyl}-5-hydroxy-6-oxo-1,6-dihydropyrimidin-2-yl)propan-2-yl]carbamate(Non-covalent)
QVV.4: 10 residues within 4Å:- Chain A: Y.44, K.54, H.61, E.81, L.107, D.109, E.120, I.121
- Ligands: MN.1, MN.2
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:K.54, A:K.54
- Water bridges: A:V.123
- pi-Stacking: A:Y.44, A:Y.44
QVV.9: 10 residues within 4Å:- Chain B: Y.44, K.54, H.61, E.81, L.107, D.109, E.120, I.121
- Ligands: MN.6, MN.7
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:K.54, B:K.54
- Water bridges: B:V.123
- pi-Stacking: B:Y.44, B:Y.44
QVV.14: 10 residues within 4Å:- Chain C: Y.44, K.54, H.61, E.81, L.107, D.109, E.120, I.121
- Ligands: MN.11, MN.12
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:K.54, C:K.54
- Water bridges: C:V.123
- pi-Stacking: C:Y.44, C:Y.44
QVV.19: 10 residues within 4Å:- Chain D: Y.44, K.54, H.61, E.81, L.107, D.109, E.120, I.121
- Ligands: MN.16, MN.17
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:K.54, D:K.54
- Water bridges: D:V.123
- pi-Stacking: D:Y.44, D:Y.44
QVV.24: 10 residues within 4Å:- Chain E: Y.44, K.54, H.61, E.81, L.107, D.109, E.120, I.121
- Ligands: MN.21, MN.22
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:K.54, E:K.54
- Water bridges: E:V.123
- pi-Stacking: E:Y.44, E:Y.44
QVV.29: 10 residues within 4Å:- Chain F: Y.44, K.54, H.61, E.81, L.107, D.109, E.120, I.121
- Ligands: MN.26, MN.27
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:K.54, F:K.54
- Water bridges: F:V.123
- pi-Stacking: F:Y.44, F:Y.44
QVV.34: 10 residues within 4Å:- Chain G: Y.44, K.54, H.61, E.81, L.107, D.109, E.120, I.121
- Ligands: MN.31, MN.32
5 PLIP interactions:5 interactions with chain G- Hydrogen bonds: G:K.54, G:K.54
- Water bridges: G:V.123
- pi-Stacking: G:Y.44, G:Y.44
QVV.39: 10 residues within 4Å:- Chain H: Y.44, K.54, H.61, E.81, L.107, D.109, E.120, I.121
- Ligands: MN.36, MN.37
5 PLIP interactions:5 interactions with chain H- Hydrogen bonds: H:K.54, H:K.54
- Water bridges: H:V.123
- pi-Stacking: H:Y.44, H:Y.44
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 4 residues within 4Å:- Chain A: G.72, S.73, R.76, K.114
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.73
- Salt bridges: A:R.76, A:K.114
SO4.10: 4 residues within 4Å:- Chain B: G.72, S.73, R.76, K.114
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.73
- Salt bridges: B:R.76, B:K.114
SO4.15: 4 residues within 4Å:- Chain C: G.72, S.73, R.76, K.114
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:S.73
- Salt bridges: C:R.76, C:K.114
SO4.20: 4 residues within 4Å:- Chain D: G.72, S.73, R.76, K.114
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:S.73
- Salt bridges: D:R.76, D:K.114
SO4.25: 4 residues within 4Å:- Chain E: G.72, S.73, R.76, K.114
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:S.73
- Salt bridges: E:R.76, E:K.114
SO4.30: 4 residues within 4Å:- Chain F: G.72, S.73, R.76, K.114
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:S.73
- Salt bridges: F:R.76, F:K.114
SO4.35: 4 residues within 4Å:- Chain G: G.72, S.73, R.76, K.114
3 PLIP interactions:3 interactions with chain G- Hydrogen bonds: G:S.73
- Salt bridges: G:R.76, G:K.114
SO4.40: 4 residues within 4Å:- Chain H: G.72, S.73, R.76, K.114
3 PLIP interactions:3 interactions with chain H- Hydrogen bonds: H:S.73
- Salt bridges: H:R.76, H:K.114
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Slavish, P.J. et al., Chemical scaffold recycling: Structure-guided conversion of an HIV integrase inhibitor into a potent influenza virus RNA-dependent RNA polymerase inhibitor designed to minimize resistance potential. Eur.J.Med.Chem. (2023)
- Release Date
- 2021-02-10
- Peptides
- Polymerase acidic protein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-octamer
- Ligands
- 16 x MN: MANGANESE (II) ION(Non-covalent)
- 8 x QQ4: Hexa Vinylpyrrolidone K15(Non-covalent)
- 8 x QVV: benzyl [2-(4-{[2-(6-amino-9H-purin-9-yl)ethyl]carbamoyl}-5-hydroxy-6-oxo-1,6-dihydropyrimidin-2-yl)propan-2-yl]carbamate(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Slavish, P.J. et al., Chemical scaffold recycling: Structure-guided conversion of an HIV integrase inhibitor into a potent influenza virus RNA-dependent RNA polymerase inhibitor designed to minimize resistance potential. Eur.J.Med.Chem. (2023)
- Release Date
- 2021-02-10
- Peptides
- Polymerase acidic protein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A