SMTL ID : 8e21.1

The crystal structure of wild type PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023034

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: H.61, D.109, E.120, I.121 Ligands: U9U.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.61, A:D.109, A:E.120, A:I.121 MN.2: 5 residues within 4Å: Chain A: H.61, E.81, P.108, D.109 Ligands: U9U.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.81, A:D.109, H2O.1, H2O.1

1 x U9U: 5-hydroxy-6-oxo-N-[2-(pyridin-4-yl)ethyl]-2-{[2-(trifluoromethyl)phenyl]methyl}-3,6-dihydropyrimidine-4-carboxamide(Non-covalent)

U9U.3: 15 residues within 4Å: Chain A: A.40, Y.44, E.46, K.54, I.58, H.61, E.81, D.109, E.120, I.121, G.122, Y.131, K.135 Ligands: MN.1, MN.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.44, A:Y.44 Hydrogen bonds: A:Y.131, A:K.135 Water bridges: A:V.123 pi-Cation interactions: A:K.135 Halogen bonds: A:E.46

1 x QQ4: Hexa Vinylpyrrolidone K15(Non-covalent)

QQ4.4: 5 residues within 4Å: Chain A: N.30, M.32, I.33, F.66, I.79 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.66, A:F.66, A:F.66, A:I.79 Hydrogen bonds: A:N.30

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 6 residues within 4Å: Chain A: I.50, E.51, T.52, N.53, K.54, S.195 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.51, A:E.51, A:T.52, A:N.53, A:N.53, A:K.54, A:S.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cuypers, M.G. et al., The crystal structure of wild type PA endonuclease (2009/H1N1/CALIFORNIA) in complex with compound SJ001023034. To Be Published

Release Date

2022-09-14

Peptides

Polymerase acidic protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polymerase acidic protein

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