SMTL ID : 6vjh.1

The crystal structure of the 2009 H1N1/California PA endonuclease wild type in complex with SJ000986192

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x QZM: 2-[2-[(cyclohexylmethyl-$l^{3}-oxidanyl)carbonylamino]propan-2-yl]-~{N}-[2-(5-methoxy-4-oxidanyl-cyclohexa-1,3,5-trien-1-yl)ethyl]-5-oxidanyl-6-oxidanylidene-pyrimidine-4-carboxamide(Non-covalent)

QZM.1: 14 residues within 4Å: Chain A: Y.44, E.46, K.54, I.58, H.61, E.81, D.109, E.120, I.121, G.122, Y.131, K.135 Ligands: MN.3, MN.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.44, A:Y.44 Hydrogen bonds: A:E.46, A:Y.131 Water bridges: A:V.123

1 x QQ4: Hexa Vinylpyrrolidone K15(Non-covalent)

QQ4.2: 3 residues within 4Å: Chain A: M.32, F.66, I.79 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.66, A:I.79

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 6 residues within 4Å: Chain A: H.61, D.109, E.120, I.121 Ligands: QZM.1, MN.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.61, A:D.109, A:E.120, A:I.121 MN.4: 6 residues within 4Å: Chain A: H.61, E.81, P.108, D.109 Ligands: QZM.1, MN.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.81, A:D.109, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Slavish, P.J. et al., Chemical scaffold recycling: Structure-guided conversion of an HIV integrase inhibitor into a potent influenza virus RNA-dependent RNA polymerase inhibitor designed to minimize resistance potential. Eur.J.Med.Chem. (2023)

Release Date

2021-02-10

Peptides

Polymerase acidic protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polymerase acidic protein

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