SMTL ID : 6w41.1

Crystal structure of SARS-CoV-2 receptor binding domain in complex with human antibody CR3022

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.08 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: F.172, P.173, V.175, S.183, L.184, S.185 Chain B: Q.166, S.168, S.182, T.184 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.168, B:S.168, B:S.182, B:T.184, A:S.183, A:S.185, A:S.185

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain B: K.45, Q.48, K.51 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.48 Salt bridges: B:K.45, B:K.51 SO4.3: 3 residues within 4Å: Chain B: P.8, D.9, S.10 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.9, B:S.10

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain C: N.25, V.49 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuan, M. et al., A highly conserved cryptic epitope in the receptor binding domains of SARS-CoV-2 and SARS-CoV. Science (2020)

Release Date

2020-03-25

Peptides

CR3022 Fab heavy chain: A
CR3022 Fab light chain: B
Spike protein S1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
C

CR3022 Fab heavy chain

CR3022 Fab light chain

Spike protein S1

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