SMTL ID : 6w98.1

Single-Particle Cryo-EM Structure of Arabinofuranosyltransferase AftD from Mycobacteria

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: A.738, D.741, D.743, T.746, T.841, E.842 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:A.738, A:D.743, A:T.746, A:T.746, A:T.841 CA.2: 5 residues within 4Å: Chain A: A.965, D.968, D.970, T.973, A.1078 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:A.965, A:D.970, A:T.973, A:T.973, A:A.1078

1 x 6OU: [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate(Non-covalent)

6OU.3: 11 residues within 4Å: Chain A: L.209, G.319, R.320, A.323, L.326, I.327, P.1294, W.1295, A.1297, A.1304, A.1390 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.209, A:L.326, A:I.327 Hydrogen bonds: A:G.319, A:R.320 Salt bridges: A:R.320

1 x PNS: 4'-PHOSPHOPANTETHEINE(Non-covalent)

PNS.4: 12 residues within 4Å: Chain A: G.314, R.318, F.1327, K.1328, L.1335, V.1338, T.1339, L.1388, A.1389, R.1392 Chain B: S.37, L.38 7 PLIP interactions: 1 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:L.38, A:L.1335 Hydrogen bonds: A:G.314, A:K.1328, A:T.1339, A:L.1388 Salt bridges: A:R.318

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, Y.Z. et al., Cryo-EM Structures and Regulation of Arabinofuranosyltransferase AftD from Mycobacteria. Mol.Cell (2020)

Release Date

2020-05-13

Peptides

F5/8 type C domain-containing protein: A
Acyl carrier protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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F5/8 type C domain-containing protein

Acyl carrier protein

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