SMTL ID : 6w9l.1

Structure of the Ancestral Glucocorticoid Receptor 2 ligand binding domain in complex with deacetylated deflazacort and PGC1a coregulator fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TUS: (4aR,4bS,5S,6aS,6bS,9aR,10aS,10bS)-5-hydroxy-6b-(hydroxyacetyl)-4a,6a,8-trimethyl-4a,4b,5,6,6a,6b,9a,10,10a,10b,11,12-dodecahydro-2H-naphtho[2',1':4,5]indeno[1,2-d][1,3]oxazol-2-one(Non-covalent)

TUS.1: 18 residues within 4Å: Chain A: M.32, L.35, N.36, G.39, Q.42, W.72, M.73, M.76, R.83, F.95, M.111, Q.114, M.118, F.207, C.208, T.211, V.219, F.221 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.35, A:W.72, A:M.76, A:Q.114 Hydrogen bonds: A:N.36, A:N.36, A:Q.42, A:R.83 Water bridges: A:L.80

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: V.10, I.11, E.12, P.13, W.49 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, X. et al., Disruption of a key ligand-H-bond network drives dissociative properties in vamorolone for Duchenne muscular dystrophy treatment. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-11-04

Peptides

Glucocorticoid Receptor: A
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glucocorticoid Receptor

Peroxisome proliferator-activated receptor gamma coactivator 1-alpha

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