SMTL ID : 6whr.1

GluN1b-GluN2B NMDA receptor in non-active 2 conformation at 4 angstrom resolution

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain B: K.516, K.519, N.719 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain D: K.516, K.519, N.719 No protein-ligand interaction detected (PLIP)

10 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: K.223, N.224 No protein-ligand interaction detected (PLIP) NAG.4: 1 residues within 4Å: Chain A: N.297 No protein-ligand interaction detected (PLIP) NAG.5: 3 residues within 4Å: Chain B: R.571, S.572, N.573 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.573 NAG.6: 1 residues within 4Å: Chain B: N.372 No protein-ligand interaction detected (PLIP) NAG.7: 1 residues within 4Å: Chain B: N.522 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.522 NAG.8: 2 residues within 4Å: Chain C: K.223, N.224 No protein-ligand interaction detected (PLIP) NAG.9: 1 residues within 4Å: Chain C: N.297 No protein-ligand interaction detected (PLIP) NAG.10: 3 residues within 4Å: Chain D: R.571, S.572, N.573 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.573 NAG.11: 1 residues within 4Å: Chain D: N.372 No protein-ligand interaction detected (PLIP) NAG.12: 1 residues within 4Å: Chain D: N.522 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.522

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chou, T.H. et al., Structural Basis of Functional Transitions in Mammalian NMDA Receptors. Cell (2020)

Release Date

2020-08-05

Peptides

Glutamate receptor ionotropic, NMDA 1: AC
Glutamate receptor ionotropic, NMDA 2B: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Membrane

We predict this structure to be a membrane protein.
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Glutamate receptor ionotropic, NMDA 1

Glutamate receptor ionotropic, NMDA 2B

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