SMTL ID : 9arh.1

Rat GluN1-GluN2B NMDA receptor channel in complex with glycine

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.224, T.226 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain C: N.224, T.226 No protein-ligand interaction detected (PLIP)

2 x GLY: GLYCINE(Non-covalent)

GLY.3: 8 residues within 4Å: Chain A: F.505, L.538, T.539, R.544, S.708, S.709, W.752, D.753 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.537, A:T.539, A:T.539, A:S.709, A:D.753 Salt bridges: A:R.544 GLY.5: 8 residues within 4Å: Chain C: F.505, L.538, T.539, R.544, S.708, S.709, W.752, D.753 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:P.537, C:T.539, C:T.539, C:S.709, C:D.753 Salt bridges: C:R.544

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain B: N.573 No protein-ligand interaction detected (PLIP) NAG.6: 1 residues within 4Å: Chain D: N.573 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chou, T.H. et al., Molecular mechanism of ligand gating and opening of NMDA receptor. Nature (2024)

Release Date

2024-07-31

Peptides

Isoform B of Glutamate receptor ionotropic, NMDA 1: AC
Glutamate receptor ionotropic, NMDA 2B: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Isoform B of Glutamate receptor ionotropic, NMDA 1

Glutamate receptor ionotropic, NMDA 2B

Related Entries With Identical Sequence