SMTL ID : 6wht.1

GluN1b-GluN2B NMDA receptor in active conformation at 4.4 angstrom resolution

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.389, G.390, H.392, V.393 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.392 NAG-NAG.2: 4 residues within 4Å: Chain C: N.389, G.390, H.392, V.393 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.392

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: N.224, V.225 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.224 NAG.4: 1 residues within 4Å: Chain B: N.573 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.573 NAG.5: 2 residues within 4Å: Chain C: N.224, V.225 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.224 NAG.6: 1 residues within 4Å: Chain D: N.573 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.573

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chou, T.H. et al., Structural Basis of Functional Transitions in Mammalian NMDA Receptors. Cell (2020)

Release Date

2020-08-05

Peptides

Glutamate receptor ionotropic, NMDA 1: AC
Glutamate receptor ionotropic, NMDA 2B: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Membrane

We predict this structure to be a membrane protein.
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Glutamate receptor ionotropic, NMDA 1

Glutamate receptor ionotropic, NMDA 2B

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