SMTL ID : 6whw.1

GluN1b-GluN2B NMDA receptor in complex with GluN2B antagonist SDZ 220-040, class 1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x QGP: (2S)-2-amino-3-[2',4'-dichloro-4-hydroxy-5-(phosphonomethyl)biphenyl-3-yl]propanoic acid(Non-covalent)

QGP.1: 14 residues within 4Å: Chain B: E.444, A.445, P.446, H.517, L.544, T.545, R.550, G.720, S.721, T.722, Y.762, D.763, V.766, Y.793 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:V.766 Hydrogen bonds: B:T.545, B:S.721, B:S.721, B:T.722, B:Y.793 Salt bridges: B:H.517, B:R.550 Halogen bonds: B:D.763 QGP.3: 14 residues within 4Å: Chain D: E.444, A.445, P.446, H.517, L.544, T.545, R.550, G.720, S.721, T.722, Y.762, D.763, V.766, Y.793 9 PLIP interactions: 9 interactions with chain D Hydrophobic interactions: D:V.766 Hydrogen bonds: D:T.545, D:S.721, D:S.721, D:T.722, D:Y.793 Salt bridges: D:H.517, D:R.550 Halogen bonds: D:D.763

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain B: N.573 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.573 NAG.4: 1 residues within 4Å: Chain D: N.573 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.573

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chou, T.H. et al., Structural Basis of Functional Transitions in Mammalian NMDA Receptors. Cell (2020)

Release Date

2020-07-15

Peptides

Ionotropic glutamate receptor , NMDA receptor GluN1b: AC
Ionotropic glutamate receptor , NMDA receptor GluN2B: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Membrane

We predict this structure to be a membrane protein.
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Ionotropic glutamate receptor , NMDA receptor GluN1b

Ionotropic glutamate receptor , NMDA receptor GluN2B

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