SMTL ID : 6wm2.1

Human V-ATPase in state 1 with SidK and ADP

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-3-3-1-1-1-3-3-3-1-1-1-9-1-1-1-1-1-mer
Ligands
1 x BGC- GAL- NGA- GAL- SIA: beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-[N-acetyl-alpha-neuraminic acid-(2-3)]beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
1 x GAL- NGA- GAL- SIA: beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-[N-acetyl-alpha-neuraminic acid-(2-3)]beta-D-galactopyranose
5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x NAG- NAG- BMA- MAN- MAN- MAN- GLC- GLC- GLC- MAN- MAN: alpha-D-glucopyranose-(1-2)-alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose-(1-3)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
4 x CLR: CHOLESTEROL(Non-covalent)
1 x PSF: 1,2-DICAPROYL-SN-PHOSPHATIDYL-L-SERINE(Non-covalent)
13 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)
10 x WSS: tri(methyl)-[2-[[(2~{R})-2-[(~{Z})-octadec-9-enoyl]oxy-3-[(~{E})-1-oxidanylideneoctadec-9-enoxy]propoxy]-oxidanyl-phosphoryl]oxyethyl]azanium(Covalent)(Non-covalent)
2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x WJP: methyl (3R,6Z,10E,14E)-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraen-1-yl dihydrogen diphosphate(Non-covalent)
1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
1 x WJS: (2~{S})-2-$l^{4}-azanyl-3-[[(2~{R})-3-octadecanoyloxy-2-oxidanyl-propoxy]-oxidanyl-oxidanylidene-$l^{6}-phosphanyl]oxy-propanoic acid(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Wang, L. et al., Structures of a Complete Human V-ATPase Reveal Mechanisms of Its Assembly. Mol.Cell (2020)
Release Date
2020-11-11
Peptides
V-type proton ATPase subunit E 1: ABC
V-type proton ATPase subunit G 1: DEF
V-type proton ATPase subunit C 1: G
V-type proton ATPase subunit H: H
V-type proton ATPase 116 kDa subunit a isoform 1: I
V-type proton ATPase catalytic subunit A: JKL
V-type proton ATPase subunit B, brain isoform: MNO
SidK: PQR
V-type proton ATPase subunit D: S
V-type proton ATPase subunit F: T
V-type proton ATPase 21 kDa proteolipid subunit: U
V-type proton ATPase 16 kDa proteolipid subunit: VWXYZ0123
V-type proton ATPase subunit d 1: 4
V-type proton ATPase subunit e 1: 5
Ribonuclease kappa: 6
V-type proton ATPase subunit S1: 7
Renin receptor: 8
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
H
B
I
C
J
D
K
E
L
F
M
G
O
H
P
I
R
J
A
K
B
L
C
M
D
N
E
O
F
P
X
Q
Y
R
Z
S
G
T
N
U
0
V
1
W
2
X
3
Y
4
Z
5
0
6
1
7
2
8
3
9
4
Q
5
S
6
T
7
U
8
V
Membrane
We predict this structure to be a membrane protein.

V-type proton ATPase subunit E 1

Toggle Identical (ABC)

V-type proton ATPase subunit G 1

Toggle Identical (DEF)

V-type proton ATPase subunit C 1

V-type proton ATPase subunit H

V-type proton ATPase 116 kDa subunit a isoform 1

V-type proton ATPase catalytic subunit A

Toggle Identical (JKL)

V-type proton ATPase subunit B, brain isoform

Toggle Identical (MNO)

SidK

Toggle Identical (PR)

V-type proton ATPase subunit D

V-type proton ATPase subunit F

V-type proton ATPase 21 kDa proteolipid subunit

V-type proton ATPase 16 kDa proteolipid subunit

Toggle Identical (VWXYZ0123)

V-type proton ATPase subunit d 1

V-type proton ATPase subunit e 1

Ribonuclease kappa

V-type proton ATPase subunit S1

Renin receptor

Related Entries With Identical Sequence

6wlw.1 | 6wlz.1 | 6wm3.1 | 6wm4.1 | 6xbw.1 | 6xby.1 | 7khr.1 | 7u4t.1 | 7u8o.1 | 7u8p.1 | 7u8q.1 | 7u8r.1 | 7unf.1 | 9b8p.1 | 9brb.1 | 9brc.1 | 9brd.1