SMTL ID : 6wnh.1

Menin bound to inhibitor M-808

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x 7MM: methyl [(1S,2R)-2-{(1S)-2-(azetidin-1-yl)-1-(3-fluorophenyl)-1-[1-({1-[4-({1-[4-(piperidin-1-yl)butanoyl]azetidin-3-yl}sulfonyl)phenyl]azetidin-3-yl}methyl)piperidin-4-yl]ethyl}cyclopentyl]carbamate(Covalent)

7MM.1: 25 residues within 4Å: Chain A: S.155, L.177, S.178, E.179, D.180, H.181, F.238, C.241, A.242, Y.276, M.278, A.279, N.282, Y.319, M.322, Y.323, G.326, C.329, R.330, W.341, E.359, E.363, V.367, V.371 Ligands: 7PR.5 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.238, A:A.242, A:M.322, A:V.371 Hydrogen bonds: A:C.241, A:Y.276, A:R.330 Salt bridges: A:D.180

5 x 7PR: praseodymium triacetate(Non-covalent)(Non-functional Binders)

7PR.2: 5 residues within 4Å: Chain A: F.365, E.366, N.369, D.370, F.439 0 PLIP interactions: 7PR.3: 9 residues within 4Å: Chain A: R.14, S.15, I.16, Q.64, P.65, S.66, P.67, T.76, F.78 2 PLIP interactions: 2 interactions with chain A, Hydrogen bonds: A:F.78 Salt bridges: A:R.14 7PR.4: 7 residues within 4Å: Chain A: W.126, L.129, S.130, R.131, S.132, Y.133, K.135 2 PLIP interactions: 2 interactions with chain A, Hydrophobic interactions: A:L.129 Salt bridges: A:K.135 7PR.5: 11 residues within 4Å: Chain A: P.245, S.246, D.252, L.257, Q.260, N.282, D.285, L.286, Y.323, R.330 Ligands: 7MM.1 1 PLIP interactions: 1 interactions with chain A, Hydrophobic interactions: A:L.257 7PR.6: 1 residues within 4Å: Chain A: H.433 0 PLIP interactions:

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, S. et al., Discovery of M-808 as a Highly Potent, Covalent, Small-Molecule Inhibitor of the Menin-MLL Interaction with StrongIn VivoAntitumor Activity. J.Med.Chem. (2020)

Release Date

2020-05-13

Peptides

Menin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Menin

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