SMTL ID : 6wtx.1 (1 other biounit)

Structure of VcINDY in complex with terephthalate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.92 Å

Oligo State

homo-dimer

Ligands

2 x UB7: terephthalic acid(Covalent)(Non-covalent)

UB7.1: 15 residues within 4Å: Chain A: S.137, N.138, T.139, G.186, S.187, P.188, S.364, N.365, T.366, A.367, A.407, T.408, P.409, P.410 Ligands: NA.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:N.365, A:T.366, A:T.408 Hydrogen bonds: A:N.138, A:N.138, A:T.139, A:S.187, A:N.365, A:T.366 UB7.4: 13 residues within 4Å: Chain B: S.137, N.138, T.139, G.186, S.187, P.188, S.364, N.365, T.366, A.367, A.407, T.408, P.409 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:N.365, B:T.366, B:T.408 Hydrogen bonds: B:N.138, B:N.138, B:T.139, B:T.139, B:S.187, B:S.364, B:N.365, B:T.366, B:T.366

4 x NA: SODIUM ION(Non-functional Binders)

NA.2: 8 residues within 4Å: Chain A: T.360, A.363, S.364, N.365, A.401, A.407, T.408 Ligands: UB7.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.363, A:N.365 NA.3: 5 residues within 4Å: Chain A: S.133, S.137, N.138, G.180, G.186 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.133, A:N.138 NA.5: 6 residues within 4Å: Chain B: T.360, A.363, S.364, N.365, A.401, A.407 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.364 NA.6: 5 residues within 4Å: Chain B: S.133, S.137, N.138, G.180, G.186 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.137, B:S.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sauer, D.B. et al., Structural basis for the reaction cycle of DASS dicarboxylate transporters. Elife (2020)

Release Date

2020-09-16

Peptides

DASS family sodium-coupled anion symporter: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Membrane

We predict this structure to be a membrane protein.
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DASS family sodium-coupled anion symporter

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