SMTL ID : 6ww5.1

Structure of VcINDY-Na-Fab84 in nanodisc

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-mer

Ligands

2 x 6PE: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE(Non-covalent)

6PE.1: 14 residues within 4Å: Chain A: L.18, L.22, L.26, P.27, F.28, I.36, L.39, A.40, A.43, V.44, L.47, L.371, L.372, V.375 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.39, A:L.39, A:V.44 6PE.4: 14 residues within 4Å: Chain B: L.18, L.22, L.26, P.27, F.28, I.36, L.39, A.40, A.43, V.44, L.47, L.371, L.372, V.375 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.39, B:L.39, B:V.44

2 x HEX: HEXANE(Non-covalent)

HEX.2: 13 residues within 4Å: Chain A: L.336, M.339, V.340, M.343, V.348, V.351, V.352, F.376, V.379, A.380, F.383, M.385, L.390 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.340, A:V.348, A:F.376, A:L.390 HEX.5: 13 residues within 4Å: Chain B: L.336, M.339, V.340, M.343, V.348, V.351, V.352, F.376, V.379, A.380, F.383, M.385, L.390 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:V.348, B:F.376, B:F.376, B:L.390

2 x OCT: N-OCTANE(Non-covalent)

OCT.3: 7 residues within 4Å: Chain A: L.131, W.135, M.205, L.209, F.255, V.259, I.263 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.135 OCT.6: 8 residues within 4Å: Chain B: L.131, M.134, W.135, M.205, L.209, F.255, V.259, I.263 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:W.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sauer, D.B. et al., Structural basis for the reaction cycle of DASS dicarboxylate transporters. Elife (2020)

Release Date

2020-09-16

Peptides

DASS family sodium-coupled anion symporter: AB
Fab84 Heavy Chain: CD
Fab84 Light Chain: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
E

E
F

F
D

Membrane

We predict this structure to be a membrane protein.
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DASS family sodium-coupled anion symporter

Fab84 Heavy Chain

Fab84 Light Chain

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