SMTL ID : 6wtx.2 (1 other biounit)

Structure of VcINDY in complex with terephthalate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.92 Å

Oligo State

homo-dimer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 6 residues within 4Å: Chain A: S.133, S.137, N.138, G.180, G.186, S.187 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.133 NA.2: 7 residues within 4Å: Chain A: T.360, A.363, S.364, N.365, A.401, A.407 Ligands: UB7.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.365, A:N.365 NA.5: 7 residues within 4Å: Chain B: T.360, A.363, S.364, N.365, A.401, A.407, T.408 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.360, B:N.365 NA.6: 5 residues within 4Å: Chain B: S.133, S.137, N.138, G.180, G.186 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.137, B:G.186

2 x UB7: terephthalic acid(Covalent)

UB7.3: 15 residues within 4Å: Chain A: S.137, N.138, T.139, G.186, S.187, P.188, S.364, N.365, T.366, A.367, A.407, T.408, P.409, P.410 Ligands: NA.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:N.365, A:T.366, A:T.408 Hydrogen bonds: A:N.138, A:N.138, A:T.139, A:T.139, A:S.187, A:N.365, A:T.366, A:A.407 UB7.4: 13 residues within 4Å: Chain B: S.137, N.138, T.139, G.186, S.187, P.188, S.364, N.365, T.366, A.367, A.407, T.408, P.409 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:N.365, B:T.366, B:T.408 Hydrogen bonds: B:N.138, B:T.139, B:S.187, B:N.365, B:T.366, B:A.367, B:A.407

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sauer, D.B. et al., Structural basis for the reaction cycle of DASS dicarboxylate transporters. Elife (2020)

Release Date

2020-09-16

Peptides

DASS family sodium-coupled anion symporter: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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DASS family sodium-coupled anion symporter

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