SMTL ID : 6x2v.1

Crystal Structure of PKI(DE)NES peptide bound to CRM1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.82 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 25 residues within 4Å: Chain A: D.18, G.19, G.20, T.21, G.22, K.23, T.24, T.25, F.35, E.36, K.37, K.38, Y.39, A.41, T.42, G.68, Q.69, N.122, K.123, D.125, I.126, S.150, A.151, K.152 Ligands: MG.2 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:G.20, A:T.21, A:T.21, A:G.22, A:K.23, A:K.23, A:K.23, A:T.24, A:T.25, A:T.25, A:E.36, A:Y.39, A:T.42, A:T.42, A:G.68, A:Q.69, A:N.122, A:K.123, A:K.123, A:A.151, A:K.152 Salt bridges: A:D.125 pi-Stacking: A:F.35, A:F.35

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.24, V.40, T.42 Ligands: GNP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.24, A:T.42

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: N.100, N.103, W.104, D.107 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.100, A:N.103, A:N.103 GOL.4: 3 residues within 4Å: Chain C: R.593, D.633, Q.636 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.593, C:D.633, C:Q.636

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baumhardt, J.M. et al., Recognition of nuclear export signals by CRM1 carrying the oncogenic E571K mutation. Mol.Biol.Cell (2020)

Release Date

2020-07-01

Peptides

GTP-binding nuclear protein Ran: A
Ran-specific GTPase-activating protein 1: B
Exportin-1: C
cAMP-dependent protein kinase inhibitor alpha: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

GTP-binding nuclear protein Ran

Ran-specific GTPase-activating protein 1

Exportin-1

cAMP-dependent protein kinase inhibitor alpha

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